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NECEvent2014_8_3_scaffold_550

Alias: 178_003_scaffold_550

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_3_scaffold_550_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..97
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TX06_9CLOT
tuf2; elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostrid
NECEvent2014_8_3_scaffold_550_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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275..424
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=7 Tax=Clostridium RepID=RL33_CLOB8
rpmG; 50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str.
NECEvent2014_8_3_scaffold_550_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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475..705
DNA (231bp) protein (77aa)
Protein translocase subunit SecE n=4 Tax=Clostridium butyricum RepID=B1QYI2_CLOBU
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN1
secE; preprotein translocase subunit SecE
NECEvent2014_8_3_scaffold_550_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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718..1266
DNA (549bp) protein (183aa)
Transcription termination/antitermination protein NusG n=2 Tax=Clostridium butyricum RepID=M8K1Q9_CLOBU rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostrid
nusG; transcription antitermination protein NusG
NECEvent2014_8_3_scaffold_550_5
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1339..1764
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=2 Tax=Clostridium butyricum RepID=C4IF66_CLOBU
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
rplK; 50S ribosomal protein L11
NECEvent2014_8_3_scaffold_550_6
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1835..2524
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=3 Tax=Clostridium butyricum RepID=C4IF65_CLOBU rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
rplA; 50S ribosomal protein L1
NECEvent2014_8_3_scaffold_550_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2733..3224
DNA (492bp) protein (164aa)
50S ribosomal protein L10 n=3 Tax=Clostridium butyricum RepID=C4IF64_CLOBU rbh
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;
rplJ; 50S ribosomal protein L10
NECEvent2014_8_3_scaffold_550_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3273..3638
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=2 Tax=Clostridium butyricum RepID=M8JF13_CLOBU
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.
rplL; 50S ribosomal protein L7/L12
NECEvent2014_8_3_scaffold_550_9
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3968..7675
DNA (3708bp) protein (1236aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridium butyricum RepID=M8K1Q3_CLOBU rbh
NECEvent2014_8_3_scaffold_550_10
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7697..11233
DNA (3537bp) protein (1179aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9V3_CLOBU rbh
NECEvent2014_8_3_scaffold_550_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


11488..11865
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=3 Tax=Clostridium butyricum RepID=C4IF60_CLOBU
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rpsL; 30S ribosomal protein S12
NECEvent2014_8_3_scaffold_550_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12026..12496
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=4 Tax=Clostridium butyricum RepID=B1QUF1_CLOBU rbh
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.
rpsG; 30S ribosomal protein S7
NECEvent2014_8_3_scaffold_550_13
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12588..14654
DNA (2067bp) protein (689aa)
Elongation factor G n=2 Tax=Clostridium butyricum RepID=M8JF07_CLOBU rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
fusA1; elongation factor G
Displaying 13 items

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