ggKbase home page

NECEvent2014_8_3_scaffold_501

Alias: 178_003_scaffold_501

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_3_scaffold_501_1
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..534)
DNA (534bp) protein (178aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HA
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLS0_9CLOT
rlmN; 23S rRNA methyltransferase
NECEvent2014_8_3_scaffold_501_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(543..1862)
DNA (1320bp) protein (440aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clost
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSJ3_CLOSA
sun; ribosomal RNA small subunit methyltransferase B
NECEvent2014_8_3_scaffold_501_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1875..2564)
DNA (690bp) protein (230aa)
Conserved protein YugP n=4 Tax=Clostridium botulinum RepID=B2THS3_CLOBB rbh
hypothetical protein
Conserved protein YugP {ECO:0000313|EMBL:ACD23829.1}; Putative neutral zinc metallopeptidase {ECO:0000313|EMBL:CDH90135.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clost
NECEvent2014_8_3_scaffold_501_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2579..3505)
DNA (927bp) protein (309aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=457396 species="B
fmt; methionyl-tRNA formyltransferase Fmt (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H7N7_9CLOT rbh
NECEvent2014_8_3_scaffold_501_5
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3523..3966)
DNA (444bp) protein (148aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CEK4_9CLOT
NECEvent2014_8_3_scaffold_501_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3978..6185)
DNA (2208bp) protein (736aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1561 species="Bacteria; Fir
Primosomal protein N n=2 Tax=Clostridium butyricum RepID=B1R2X3_CLOBU
priA; primosomal protein N' rbh
NECEvent2014_8_3_scaffold_501_7
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6231..7421)
DNA (1191bp) protein (397aa)
coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase (EC:4.1.1.36)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H417_9CLOT rbh
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase {ECO:0000313|EMBL:EEH98195.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clos
NECEvent2014_8_3_scaffold_501_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7424..7642)
DNA (219bp) protein (73aa)
rpoZ; DNA-directed RNA polymerase, omega subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=1 Tax=Clostridium intestinale URNW RepID=U2NPG4_9CLOT
NECEvent2014_8_3_scaffold_501_9
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7635..8258)
DNA (624bp) protein (208aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
Guanylate kinase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EZ18_9CLOT
gmk; guanylate kinase
NECEvent2014_8_3_scaffold_501_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8260..8529)
DNA (270bp) protein (90aa)
UPF0296 protein CLL_A1210 n=2 Tax=Clostridium botulinum B RepID=Y1210_CLOBB
hypothetical protein
UPF0296 protein CLL_A1210 {ECO:0000255|HAMAP-Rule:MF_01503}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain
NECEvent2014_8_3_scaffold_501_11
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8549..9430)
DNA (882bp) protein (294aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R2X8_CLOBU
TIGR00255 family protein {ECO:0000313|EMBL:ENZ35965.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_3_scaffold_501_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10143..11510)
DNA (1368bp) protein (456aa)
Inner membrane protein YicO n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXW5_CLOBO rbh
inner membrane protein YicO
Inner membrane protein YicO {ECO:0000313|EMBL:EES50587.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. '
NECEvent2014_8_3_scaffold_501_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11775..12857)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1P4_9CLOT rbh
asparaginase family protein
Asparaginase family protein {ECO:0000313|EMBL:AIY85125.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sulli
NECEvent2014_8_3_scaffold_501_14
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12963..13364)
DNA (402bp) protein (134aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JJB2_CLOBU
Phosphate ABC transporter, periplasmic phosphate-binding protein PstS {ECO:0000313|EMBL:KJZ84601.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
hypothetical protein
NECEvent2014_8_3_scaffold_501_15
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13515..14540
DNA (1026bp) protein (342aa)
Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}; EC=2.6.1.42 {ECO:0000256|RuleBase:RU004517};; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostri
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain-amino-acid aminotransferase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q6J0_9CLOT rbh
NECEvent2014_8_3_scaffold_501_16
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14573..16051)
DNA (1479bp) protein (493aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=1351755 species="B
spoIVA; stage IV sporulation protein A (EC:3.6.1.3)
Stage IV sporulation protein A n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLR0_9CLOT rbh
Displaying 16 items

View Taxonomy