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NECEvent2014_8_3_scaffold_583

Alias: 178_003_scaffold_583

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_3_scaffold_583_1
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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93..2732
DNA (2640bp) protein (880aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256
alaS; alanine--tRNA ligase (EC:6.1.1.7)
Alanyl-tRNA synthetase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H378_9CLOT rbh
NECEvent2014_8_3_scaffold_583_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2867..3124
DNA (258bp) protein (86aa)
UPF0297 protein CLH_1126 n=4 Tax=Clostridium botulinum RepID=Y1126_CLOBA
hypothetical protein
UPF0297 protein SR42_10475 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
NECEvent2014_8_3_scaffold_583_3
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3177..3596
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=457396 specie
Putative Holliday junction resolvase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEU1_9CLOT
hypothetical protein
NECEvent2014_8_3_scaffold_583_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3672..3941
DNA (270bp) protein (90aa)
UPF0473 protein CLH_1128 n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=Y1128_CLOBA
hypothetical protein
UPF0473 protein UC77_14035 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_8_3_scaffold_583_5
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3968..4429
DNA (462bp) protein (154aa)
Ferric uptake regulation protein Fur n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNF1_CLOSA
ferric uptake regulator family protein
Putative Probable transcription regulator {ECO:0000313|EMBL:CDG01532.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chau
NECEvent2014_8_3_scaffold_583_6
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4470..6137
DNA (1668bp) protein (556aa)
rnjA1; ribonuclease J 1 (EC:3.1.-.-)
Ribonuclease J 1 {ECO:0000313|EMBL:AGX42335.1}; EC=3.1.-.- {ECO:0000313|EMBL:AGX42335.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
Ribonuclease J 1 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP12_CLOSA
NECEvent2014_8_3_scaffold_583_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6274..8100
DNA (1827bp) protein (609aa)
UPI0003D5C205 related cluster n=1 Tax=unknown RepID=UPI0003D5C205
GTP-binding protein TypA {ECO:0000313|EMBL:KHD15574.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
typA; GTP-binding protein TypA/BipA
NECEvent2014_8_3_scaffold_583_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8183..9235
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MSB1_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42337.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM
NECEvent2014_8_3_scaffold_583_9
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9250..9894
DNA (645bp) protein (215aa)
O-methyltransferase, family 3 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MAP4_9CLOT
O-methyltransferase family protein {ECO:0000313|EMBL:AJG97849.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (
O-methyltransferase, family 3
NECEvent2014_8_3_scaffold_583_10
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9900..11135
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H7Q8_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH98223.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
peptidase U32
NECEvent2014_8_3_scaffold_583_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11158..11775
DNA (618bp) protein (206aa)
udk; uridine kinase (EC:2.7.1.48)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|
Uridine kinase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KGG6_9CLOT rbh
NECEvent2014_8_3_scaffold_583_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11836..13437
DNA (1602bp) protein (534aa)
Penicillin-binding protein 2 n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXY9_CLOBO
penicillin binding transpeptidase domain protein
Penicillin binding transpeptidase domain protein {ECO:0000313|EMBL:AIY85062.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridi
NECEvent2014_8_3_scaffold_583_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13709..13930
DNA (222bp) protein (74aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A6LSG7_CLOB8
sporulation sigma factor SigK
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clost
Displaying 13 items

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