ggKbase home page

NECEvent2014_8_3_Clostridium_paraputrificum_30_11

NECEvent2014_8_3_Clostridium_30_12
In projects: NECEvent2014_8_3

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

Based on gyrA

Displaying items 101-150 of 655 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_3_scaffold_2221 178_003_scaffold_2221
Genus: Clostridium (75%)
4 2988 bp 30.25 9.94 96.99
NECEvent2014_8_3_scaffold_2863 178_003_scaffold_2863
Genus: Clostridium (100%)
3 2148 bp 30.77 9.08 96.93
NECEvent2014_8_3_scaffold_1674 178_003_scaffold_1674
Genus: Clostridium (100%)
5 4365 bp 29.51 10.86 96.91
NECEvent2014_8_3_scaffold_1268 178_003_scaffold_1268
Genus: Clostridium (100%)
7 6072 bp 29.05 10.00 96.79
NECEvent2014_8_3_scaffold_901 178_003_scaffold_901
Genus: Clostridium (71.43%)
7 9054 bp 29.29 12.26 96.79
NECEvent2014_8_3_scaffold_1572 178_003_scaffold_1572
Species: Clostridium baratii (50%)
4 4709 bp 30.88 10.13 96.77
NECEvent2014_8_3_scaffold_2752 178_003_scaffold_2752
Genus: Clostridium (100%)
3 2279 bp 29.22 10.14 96.75
NECEvent2014_8_3_scaffold_3717 178_003_scaffold_3717
Species: Clostridium perfringens (50%)
2 1511 bp 33.22 11.32 96.69
NECEvent2014_8_3_scaffold_1609 178_003_scaffold_1609
Genus: Clostridium (66.67%)
3 4583 bp 31.57 10.02 96.68
NECEvent2014_8_3_scaffold_1921 178_003_scaffold_1921
Species: Clostridium botulinum (75%)
4 3662 bp 34.08 14.01 96.67
NECEvent2014_8_3_scaffold_1502 178_003_scaffold_1502
Genus: Clostridium (100%)
6 4938 bp 32.75 13.09 96.66
NECEvent2014_8_3_scaffold_3443 178_003_scaffold_3443
Species: Clostridium intestinale (50%)
2 1673 bp 31.32 11.30 96.65
NECEvent2014_8_3_scaffold_1388 178_003_scaffold_1388
Genus: Clostridium (100%)
8 5494 bp 33.02 14.06 96.65
NECEvent2014_8_3_scaffold_1807 178_003_scaffold_1807
Species: Clostridium baratii (50%)
2 3933 bp 33.97 14.57 96.57
NECEvent2014_8_3_scaffold_2067 178_003_scaffold_2067
Genus: Clostridium (75%)
4 3310 bp 28.61 12.87 96.53
NECEvent2014_8_3_scaffold_1847 178_003_scaffold_1847
Genus: Clostridium (75%)
4 3834 bp 28.43 9.12 96.48
NECEvent2014_8_3_scaffold_2500 178_003_scaffold_2500
Phylum: Firmicutes (60%)
5 2563 bp 28.72 17.44 96.45
NECEvent2014_8_3_scaffold_1218 178_003_scaffold_1218
Genus: Clostridium (85.71%)
7 6430 bp 31.65 12.88 96.44
NECEvent2014_8_3_scaffold_950 178_003_scaffold_950
Order: Clostridiales (52.63%)
19 8357 bp 29.59 10.32 96.39
NECEvent2014_8_3_scaffold_1993 178_003_scaffold_1993
Species: Clostridium acetobutylicum (100%)
4 3480 bp 27.18 9.05 96.38
NECEvent2014_8_3_scaffold_1818 178_003_scaffold_1818
Species: Clostridium botulinum (66.67%)
3 3885 bp 26.41 8.26 96.29
NECEvent2014_8_3_scaffold_1596 178_003_scaffold_1596
Species: [Clostridium] spiroforme (50%)
2 4621 bp 30.23 10.32 96.28
NECEvent2014_8_3_scaffold_2632 178_003_scaffold_2632
Species: Clostridium baratii (66.67%)
3 2403 bp 28.92 10.36 96.25
NECEvent2014_8_3_scaffold_4593 178_003_scaffold_4593
Species: Clostridium sp. IBUN13A (50%)
2 1113 bp 26.68 7.28 96.23
NECEvent2014_8_3_scaffold_2745 178_003_scaffold_2745
Genus: Clostridium (66.67%)
3 2283 bp 25.23 8.41 96.19
NECEvent2014_8_3_scaffold_2945 178_003_scaffold_2945
Species: Clostridium botulinum (66.67%)
3 2066 bp 30.11 9.15 96.13
NECEvent2014_8_3_scaffold_1787 178_003_scaffold_1787
Genus: Clostridium (66.67%)
3 3989 bp 30.03 10.60 96.11
NECEvent2014_8_3_scaffold_1472 178_003_scaffold_1472
Species: Clostridium baratii (100%)
3 5101 bp 30.39 11.94 96.10
NECEvent2014_8_3_scaffold_1215 178_003_scaffold_1215
Genus: Clostridium (100%)
6 6447 bp 30.73 12.19 96.09
NECEvent2014_8_3_scaffold_998 178_003_scaffold_998
Species: Clostridium botulinum (50%)
10 8006 bp 29.75 9.61 96.08
NECEvent2014_8_3_scaffold_1326 178_003_scaffold_1326
Species: Clostridium sp. 7_2_43FAA (50%)
4 5746 bp 29.95 11.54 96.07
NECEvent2014_8_3_scaffold_679 178_003_scaffold_679
Order: Clostridiales (75%)
4 12025 bp 31.28 12.67 96.02
NECEvent2014_8_3_scaffold_4584 178_003_scaffold_4584
Species: Clostridium baratii (50%)
2 1119 bp 32.62 10.59 95.98
NECEvent2014_8_3_scaffold_4801 178_003_scaffold_4801
Species: Clostridium botulinum (50%)
2 1044 bp 29.98 9.20 95.98
NECEvent2014_8_3_scaffold_1738 178_003_scaffold_1738
Genus: Clostridium (80%)
5 4143 bp 29.76 10.39 95.95
NECEvent2014_8_3_scaffold_1562 178_003_scaffold_1562
Genus: Clostridium (100%)
7 4778 bp 31.27 13.19 95.88
NECEvent2014_8_3_scaffold_2491 178_003_scaffold_2491
Species: Clostridium beijerinckii (50%)
2 2568 bp 29.98 8.12 95.79
NECEvent2014_8_3_scaffold_1720 178_003_scaffold_1720
Species: Clostridium chauvoei (50%)
4 4231 bp 29.50 9.64 95.79
NECEvent2014_8_3_scaffold_1069 178_003_scaffold_1069
Species: Clostridium sp. 7_2_43FAA (66.67%)
3 7414 bp 29.26 11.31 95.78
NECEvent2014_8_3_scaffold_2309 178_003_scaffold_2309
Species: Clostridium saccharobutylicum (100%)
1 2855 bp 32.22 14.92 95.73
NECEvent2014_8_3_scaffold_3479 178_003_scaffold_3479
Genus: Clostridium (100%)
3 1652 bp 28.39 11.80 95.70
NECEvent2014_8_3_scaffold_1104 178_003_scaffold_1104
Genus: Clostridium (60%)
5 7210 bp 29.25 14.11 95.64
NECEvent2014_8_3_scaffold_1415 178_003_scaffold_1415
Order: Clostridiales (66.67%)
6 5365 bp 30.16 12.02 95.62
NECEvent2014_8_3_scaffold_3135 178_003_scaffold_3135
Species: Coprobacillus sp. 3_3_56FAA (50%)
2 1899 bp 30.91 10.51 95.58
NECEvent2014_8_3_scaffold_3805 178_003_scaffold_3805
Species: Clostridium carboxidivorans (50%)
2 1463 bp 27.68 9.43 95.56
NECEvent2014_8_3_scaffold_1653 178_003_scaffold_1653
Species: Clostridium beijerinckii (60%)
5 4447 bp 31.01 12.99 95.53
NECEvent2014_8_3_scaffold_1735 178_003_scaffold_1735
Genus: Clostridium (100%)
6 4160 bp 29.38 10.56 95.48
NECEvent2014_8_3_scaffold_1854 178_003_scaffold_1854
Genus: Clostridium (100%)
3 3824 bp 29.39 11.57 95.48
NECEvent2014_8_3_scaffold_4198 178_003_scaffold_4198
Species: Clostridium baratii (50%)
2 1282 bp 31.75 10.88 95.48
NECEvent2014_8_3_scaffold_971 178_003_scaffold_971
Genus: Clostridium (72.73%)
11 8202 bp 29.18 10.77 95.46
Displaying items 101-150 of 655 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.