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NECEvent2014_8_3_Clostridium_paraputrificum_30_11

NECEvent2014_8_3_Clostridium_30_12
In projects: NECEvent2014_8_3

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

Based on gyrA

Displaying items 151-200 of 655 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_3_scaffold_3619 178_003_scaffold_3619
Species: Clostridium baratii (100%)
2 1566 bp 30.72 12.26 95.40
NECEvent2014_8_3_scaffold_2861 178_003_scaffold_2861
Species: Clostridium chauvoei (50%)
4 2149 bp 30.15 10.33 95.35
NECEvent2014_8_3_scaffold_2767 178_003_scaffold_2767
Species: Clostridium botulinum (100%)
1 2270 bp 29.74 9.38 95.29
NECEvent2014_8_3_scaffold_4246 178_003_scaffold_4246
Genus: Clostridium (66.67%)
3 1263 bp 28.66 8.91 95.25
NECEvent2014_8_3_scaffold_2570 178_003_scaffold_2570
Genus: Clostridium (75%)
4 2479 bp 28.84 11.86 95.24
NECEvent2014_8_3_scaffold_4459 178_003_scaffold_4459
Species: Clostridium celatum (50%)
2 1169 bp 28.66 7.96 95.21
NECEvent2014_8_3_scaffold_1295 178_003_scaffold_1295
Species: Clostridium botulinum (50%)
4 5888 bp 30.77 13.48 95.07
NECEvent2014_8_3_scaffold_3701 178_003_scaffold_3701
Species: Clostridium intestinale (100%)
1 1518 bp 24.77 9.29 95.06
NECEvent2014_8_3_scaffold_1432 178_003_scaffold_1432
Species: Clostridium sp. 7_2_43FAA (83.33%)
6 5274 bp 28.16 9.30 95.05
NECEvent2014_8_3_scaffold_2016 178_003_scaffold_2016
Species: Clostridium celatum (66.67%)
3 3412 bp 29.07 10.99 95.05
NECEvent2014_8_3_scaffold_3756 178_003_scaffold_3756
Species: Clostridium colicanis (100%)
1 1493 bp 32.75 10.25 95.04
NECEvent2014_8_3_scaffold_1729 178_003_scaffold_1729
Genus: Clostridium (50%)
8 4177 bp 26.48 9.41 95.02
NECEvent2014_8_3_scaffold_3579 178_003_scaffold_3579
Species: Clostridium saccharobutylicum (50%)
2 1595 bp 29.09 9.50 94.98
NECEvent2014_8_3_scaffold_2077 178_003_scaffold_2077
Order: Clostridiales (100%)
3 3292 bp 26.43 8.29 94.96
NECEvent2014_8_3_scaffold_4070 178_003_scaffold_4070
Species: Clostridium sp. DL-VIII (50%)
2 1343 bp 28.67 9.38 94.94
NECEvent2014_8_3_scaffold_1693 178_003_scaffold_1693
Species: Clostridium colicanis (50%)
4 4304 bp 29.39 8.68 94.93
NECEvent2014_8_3_scaffold_1826 178_003_scaffold_1826
Genus: Clostridium (100%)
5 3875 bp 31.15 9.29 94.92
NECEvent2014_8_3_scaffold_2572 178_003_scaffold_2572
Order: Clostridiales (66.67%)
3 2478 bp 31.84 9.20 94.92
NECEvent2014_8_3_scaffold_2903 178_003_scaffold_2903
Species: Clostridium tyrobutyricum (50%)
2 2102 bp 31.07 12.20 94.91
NECEvent2014_8_3_scaffold_3562 178_003_scaffold_3562
Species: Clostridium botulinum (50%)
2 1606 bp 27.33 10.27 94.89
NECEvent2014_8_3_scaffold_1804 178_003_scaffold_1804
Species: Clostridium saccharobutylicum (50%)
4 3940 bp 30.20 10.43 94.87
NECEvent2014_8_3_scaffold_2502 178_003_scaffold_2502
Species: Clostridium baratii (75%)
4 2559 bp 29.03 10.79 94.84
NECEvent2014_8_3_scaffold_4186 178_003_scaffold_4186
Species: Clostridium chauvoei (100%)
1 1285 bp 32.61 11.56 94.79
NECEvent2014_8_3_scaffold_1919 178_003_scaffold_1919
Species: Gottschalkia acidurici (50%)
4 3662 bp 26.57 9.50 94.78
NECEvent2014_8_3_scaffold_2092 178_003_scaffold_2092
Species: Clostridium botulinum (50%)
4 3267 bp 28.71 9.73 94.77
NECEvent2014_8_3_scaffold_3390 178_003_scaffold_3390
Species: Clostridium saccharoperbutylacetonicum (50%)
2 1716 bp 30.48 9.00 94.76
NECEvent2014_8_3_scaffold_703 178_003_scaffold_703
Genus: Clostridium (100%)
15 11658 bp 30.03 10.76 94.75
NECEvent2014_8_3_scaffold_2302 178_003_scaffold_2302
Genus: Clostridium (66.67%)
3 2860 bp 31.47 14.42 94.72
NECEvent2014_8_3_scaffold_2124 178_003_scaffold_2124
Genus: Clostridium (88.89%)
9 3184 bp 34.74 12.96 94.69
NECEvent2014_8_3_scaffold_4661 178_003_scaffold_4661
Species: Clostridium sp. Maddingley MBC34-26 (50%)
2 1086 bp 26.98 8.01 94.48
NECEvent2014_8_3_scaffold_1122 178_003_scaffold_1122
Genus: Clostridium (80%)
5 7069 bp 28.65 10.86 94.43
NECEvent2014_8_3_scaffold_853 178_003_scaffold_853
Species: Clostridium baratii (85.71%)
7 9488 bp 30.80 14.24 94.35
NECEvent2014_8_3_scaffold_799 178_003_scaffold_799
Species: Clostridium baratii (50%)
10 10212 bp 30.11 11.78 94.33
NECEvent2014_8_3_scaffold_1169 178_003_scaffold_1169
Genus: Clostridium (87.5%)
8 6730 bp 30.67 11.92 94.32
NECEvent2014_8_3_scaffold_1884 178_003_scaffold_1884
Genus: Clostridium (100%)
4 3775 bp 27.58 10.37 94.25
NECEvent2014_8_3_scaffold_4469 178_003_scaffold_4469
Species: Clostridium pasteurianum (100%)
1 1165 bp 30.30 9.01 94.25
NECEvent2014_8_3_scaffold_1838 178_003_scaffold_1838
Genus: Clostridium (100%)
7 3854 bp 30.51 9.50 94.19
NECEvent2014_8_3_scaffold_1267 178_003_scaffold_1267
Genus: Clostridium (100%)
8 6103 bp 29.54 11.70 94.13
NECEvent2014_8_3_scaffold_1079 178_003_scaffold_1079
Genus: Clostridium (100%)
7 7355 bp 31.08 11.26 94.10
NECEvent2014_8_3_scaffold_1091 178_003_scaffold_1091
Genus: Clostridium (100%)
9 7311 bp 27.70 10.18 94.05
NECEvent2014_8_3_scaffold_968 178_003_scaffold_968
Genus: Clostridium (100%)
8 8248 bp 28.60 10.64 93.99
NECEvent2014_8_3_scaffold_2215 178_003_scaffold_2215
Genus: Clostridium (100%)
3 2998 bp 29.32 13.06 93.96
NECEvent2014_8_3_scaffold_1312 178_003_scaffold_1312
Genus: Clostridium (50%)
6 5811 bp 30.61 14.25 93.96
NECEvent2014_8_3_scaffold_759 178_003_scaffold_759
Genus: Clostridium (100%)
11 10781 bp 31.40 12.52 93.92
NECEvent2014_8_3_scaffold_1389 178_003_scaffold_1389
Genus: Clostridium (80%)
5 5486 bp 29.91 11.68 93.89
NECEvent2014_8_3_scaffold_4642 178_003_scaffold_4642
Species: Clostridium botulinum (50%)
2 1093 bp 32.02 11.94 93.87
NECEvent2014_8_3_scaffold_1803 178_003_scaffold_1803
Genus: Clostridium (100%)
5 3942 bp 31.74 15.68 93.68
NECEvent2014_8_3_scaffold_1371 178_003_scaffold_1371
Genus: Clostridium (85.71%)
7 5578 bp 29.74 11.89 93.64
NECEvent2014_8_3_scaffold_1991 178_003_scaffold_1991
Genus: Clostridium (100%)
3 3494 bp 31.05 13.14 93.59
NECEvent2014_8_3_scaffold_332 178_003_scaffold_332
Genus: Clostridium (77.78%)
18 21349 bp 30.66 12.98 93.59
Displaying items 151-200 of 655 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.