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NECEvent2014_8_3_Clostridium_paraputrificum_30_11

NECEvent2014_8_3_Clostridium_30_12
In projects: NECEvent2014_8_3

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

Based on gyrA

Displaying items 201-250 of 655 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_3_scaffold_2054 178_003_scaffold_2054
Species: Clostridium botulinum (50%)
4 3332 bp 27.91 12.06 92.74
NECEvent2014_8_3_scaffold_1627 178_003_scaffold_1627
Order: Clostridiales (100%)
3 4515 bp 30.43 12.06 90.17
NECEvent2014_8_3_scaffold_1763 178_003_scaffold_1763
Genus: Clostridium (60%)
5 4083 bp 29.83 12.05 89.93
NECEvent2014_8_3_scaffold_1411 178_003_scaffold_1411
Species: Clostridium sartagoforme (50%)
4 5392 bp 28.82 12.05 91.36
NECEvent2014_8_3_scaffold_1415 178_003_scaffold_1415
Order: Clostridiales (66.67%)
6 5365 bp 30.16 12.02 95.62
NECEvent2014_8_3_scaffold_1458 178_003_scaffold_1458
Species: Clostridium paraputrificum (100%)
2 5167 bp 29.19 12.02 91.85
NECEvent2014_8_3_scaffold_1436 178_003_scaffold_1436
Genus: Clostridium (83.33%)
6 5244 bp 28.18 12.01 87.70
NECEvent2014_8_3_scaffold_777 178_003_scaffold_777
Order: Clostridiales (87.5%)
8 10442 bp 30.59 12.01 89.44
NECEvent2014_8_3_scaffold_4137 178_003_scaffold_4137
Species: Clostridium baratii (50%)
2 1311 bp 30.51 12.01 97.94
NECEvent2014_8_3_scaffold_1507 178_003_scaffold_1507
Genus: Clostridium (80%)
5 4929 bp 30.15 11.99 92.88
NECEvent2014_8_3_scaffold_1612 178_003_scaffold_1612
Genus: Clostridium (60%)
5 4582 bp 31.21 11.98 90.62
NECEvent2014_8_3_scaffold_2335 178_003_scaffold_2335
Species: Clostridium baratii (100%)
5 2806 bp 30.47 11.97 98.57
NECEvent2014_8_3_scaffold_2022 178_003_scaffold_2022
Species: Clostridium botulinum (50%)
2 3400 bp 30.56 11.96 89.03
NECEvent2014_8_3_scaffold_773 178_003_scaffold_773
Genus: Clostridium (85.71%)
14 14437 bp 30.76 11.95 87.67
NECEvent2014_8_3_scaffold_1448 178_003_scaffold_1448
Genus: Clostridium (100%)
7 5200 bp 29.44 11.94 87.17
NECEvent2014_8_3_scaffold_1472 178_003_scaffold_1472
Species: Clostridium baratii (100%)
3 5101 bp 30.39 11.94 96.10
NECEvent2014_8_3_scaffold_4642 178_003_scaffold_4642
Species: Clostridium botulinum (50%)
2 1093 bp 32.02 11.94 93.87
NECEvent2014_8_3_scaffold_3508 178_003_scaffold_3508
Species: Clostridium sartagoforme (50%)
2 1634 bp 28.82 11.93 87.03
NECEvent2014_8_3_scaffold_2299 178_003_scaffold_2299
Genus: Clostridium (66.67%)
3 2867 bp 30.03 11.93 79.94
NECEvent2014_8_3_scaffold_1604 178_003_scaffold_1604
Genus: Clostridium (70%)
10 4603 bp 31.94 11.93 92.74
NECEvent2014_8_3_scaffold_1169 178_003_scaffold_1169
Genus: Clostridium (87.5%)
8 6730 bp 30.67 11.92 94.32
NECEvent2014_8_3_scaffold_1192 178_003_scaffold_1192
Genus: Clostridium (62.5%)
8 6595 bp 30.57 11.92 85.84
NECEvent2014_8_3_scaffold_513 178_003_scaffold_513
Genus: Clostridium (73.33%)
15 15643 bp 29.02 11.92 91.11
NECEvent2014_8_3_scaffold_2392 178_003_scaffold_2392
Genus: Clostridium (66.67%)
3 2717 bp 22.05 11.92 98.82
NECEvent2014_8_3_scaffold_1696 178_003_scaffold_1696
Genus: Clostridium (100%)
3 4295 bp 30.57 11.91 81.44
NECEvent2014_8_3_scaffold_260 178_003_scaffold_260
Genus: Clostridium (96.15%)
26 24807 bp 29.45 11.91 91.06
NECEvent2014_8_3_scaffold_532 178_003_scaffold_532
Genus: Clostridium (88.89%)
18 15122 bp 31.48 11.90 97.41
NECEvent2014_8_3_scaffold_3669 178_003_scaffold_3669
Species: Clostridium botulinum (66.67%)
3 1538 bp 30.69 11.90 72.17
NECEvent2014_8_3_scaffold_914 178_003_scaffold_914
Genus: Clostridium (90%)
10 8883 bp 28.63 11.89 90.61
NECEvent2014_8_3_scaffold_1217 178_003_scaffold_1217
Genus: Clostridium (87.5%)
8 6434 bp 30.51 11.89 98.34
NECEvent2014_8_3_scaffold_1371 178_003_scaffold_1371
Genus: Clostridium (85.71%)
7 5578 bp 29.74 11.89 93.64
NECEvent2014_8_3_scaffold_1271 178_003_scaffold_1271
Genus: Clostridium (88.89%)
9 6062 bp 27.28 11.88 78.19
NECEvent2014_8_3_scaffold_4869 178_003_scaffold_4869
Species: Clostridium chauvoei (50%)
2 1023 bp 32.26 11.88 78.59
NECEvent2014_8_3_scaffold_1975 178_003_scaffold_1975
Genus: Clostridium (100%)
7 3539 bp 28.40 11.87 92.82
NECEvent2014_8_3_scaffold_1506 178_003_scaffold_1506
Species: Clostridium sp. 7_2_43FAA (100%)
4 4933 bp 31.00 11.86 86.84
NECEvent2014_8_3_scaffold_2570 178_003_scaffold_2570
Genus: Clostridium (75%)
4 2479 bp 28.84 11.86 95.24
NECEvent2014_8_3_scaffold_863 178_003_scaffold_863
Genus: Clostridium (100%)
7 9384 bp 30.05 11.86 90.31
NECEvent2014_8_3_scaffold_3947 178_003_scaffold_3947
Species: Clostridium saccharobutylicum (50%)
2 1395 bp 24.95 11.83 87.31
NECEvent2014_8_3_scaffold_1176 178_003_scaffold_1176
Order: Clostridiales (85.71%)
7 6683 bp 30.56 11.81 92.38
NECEvent2014_8_3_scaffold_3479 178_003_scaffold_3479
Genus: Clostridium (100%)
3 1652 bp 28.39 11.80 95.70
NECEvent2014_8_3_scaffold_1347 178_003_scaffold_1347
Species: Clostridium perfringens (50%)
6 5681 bp 31.63 11.80 90.09
NECEvent2014_8_3_scaffold_583 178_003_scaffold_583
Genus: Clostridium (100%)
13 13932 bp 30.72 11.80 92.74
NECEvent2014_8_3_scaffold_2751 178_003_scaffold_2751
Genus: Clostridium (100%)
4 2279 bp 30.10 11.78 99.78
NECEvent2014_8_3_scaffold_2059 178_003_scaffold_2059
Species: Clostridium sp. 7_2_43FAA (50%)
2 3324 bp 28.58 11.78 93.50
NECEvent2014_8_3_scaffold_799 178_003_scaffold_799
Species: Clostridium baratii (50%)
10 10212 bp 30.11 11.78 94.33
NECEvent2014_8_3_scaffold_1444 178_003_scaffold_1444
Genus: Clostridium (75%)
8 5222 bp 29.36 11.75 90.08
NECEvent2014_8_3_scaffold_1146 178_003_scaffold_1146
Order: Clostridiales (50%)
8 6919 bp 29.25 11.73 71.46
NECEvent2014_8_3_scaffold_1267 178_003_scaffold_1267
Genus: Clostridium (100%)
8 6103 bp 29.54 11.70 94.13
NECEvent2014_8_3_scaffold_1701 178_003_scaffold_1701
Species: Clostridium botulinum (66.67%)
3 4284 bp 31.47 11.69 90.90
NECEvent2014_8_3_scaffold_2447 178_003_scaffold_2447
Genus: Clostridium (66.67%)
3 2633 bp 29.32 11.68 89.33
Displaying items 201-250 of 655 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.