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NECEvent2014_8_4_scaffold_76

Alias: 178_004_scaffold_76

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_4_scaffold_76_1
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1175)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EBE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI91772.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
putative membrane protein
NECEvent2014_8_4_scaffold_76_2
unknown

Not on your lists

1306..1629
DNA (324bp) protein (108aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_76_3
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1750..2334
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGB4_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH99012.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
lemA protein
NECEvent2014_8_4_scaffold_76_4
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2337..3119
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LUN6_CLOB8 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR34066.1}; Flags: Precursor;; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beij
NECEvent2014_8_4_scaffold_76_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3166..4554)
DNA (1389bp) protein (463aa)
methyl-accepting chemotaxis protein n=1 Tax=Clostridium sp. JC122 RepID=UPI000287C0D0
Uncharacterized protein {ECO:0000313|EMBL:KJU72450.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
methyl-accepting chemotaxis (MCP) signaling domain protein
NECEvent2014_8_4_scaffold_76_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4661..4978)
DNA (318bp) protein (106aa)
Uncharacterized protein n=4 Tax=Clostridium botulinum RepID=B2TPQ4_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL07835.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
NECEvent2014_8_4_scaffold_76_7
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4985..5536)
DNA (552bp) protein (184aa)
rbr3B; Reverse rubrerythrin-2 (EC:1.11.1.1)
Reverse rubrerythrin-2 {ECO:0000313|EMBL:CDM70180.1}; EC=1.11.1.1 {ECO:0000313|EMBL:CDM70180.1};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;"
Rbr3B: reverse rubrerythrin-2 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MNK5_9CLOT
NECEvent2014_8_4_scaffold_76_8
unknown

Not on your lists

comp(5668..5886)
DNA (219bp) protein (73aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_76_9
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6004..6984
DNA (981bp) protein (327aa)
Putative uncharacterized protein n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V4I9_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL09493.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
NECEvent2014_8_4_scaffold_76_10
unknown

Not on your lists

comp(7008..7529)
DNA (522bp) protein (174aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_76_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7644..8030)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVT6_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43552.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM
NECEvent2014_8_4_scaffold_76_12
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8217..8561
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98071.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
macrophage migration inhibitory factor family protein
NECEvent2014_8_4_scaffold_76_13
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8610..10094)
DNA (1485bp) protein (495aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:
Glycerol kinase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QDD9_9CLOT
glycerol kinase
NECEvent2014_8_4_scaffold_76_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10200..11630)
DNA (1431bp) protein (477aa)
purB; adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID
Adenylosuccinate lyase n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SSF2_CLOPS
NECEvent2014_8_4_scaffold_76_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11804..12022
DNA (219bp) protein (73aa)
Putative membrane protein n=2 Tax=Clostridium botulinum E RepID=B2V4I7_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJU71399.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
NECEvent2014_8_4_scaffold_76_16
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12057..12317)
DNA (261bp) protein (87aa)
HPr family phosphocarrier n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MPN2_CLOSA
ptsH; phosphocarrier protein HPr
HPr family phosphocarrier {ECO:0000313|EMBL:AGX42458.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DS
NECEvent2014_8_4_scaffold_76_17
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12445..12705)
DNA (261bp) protein (87aa)
Stage V sporulation protein S n=2 Tax=Clostridium RepID=R9CDY0_9CLOT
Putative Stage V sporulation protein S {ECO:0000313|EMBL:CDG01644.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoe
spoVS; stage V sporulation protein S
NECEvent2014_8_4_scaffold_76_18
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12883..14424)
DNA (1542bp) protein (514aa)
rny; ribonuclease Y (EC:3.1.-.-)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1345695 species="Bacteria; Firmicutes; Clostrid
Ribonuclease Y n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS45_CLOSA
NECEvent2014_8_4_scaffold_76_19
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14768..15865)
DNA (1098bp) protein (366aa)
Protein recA n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H316_9CLOT rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=457396 species="Bacteria; Firmicute
recA; recombinase A
NECEvent2014_8_4_scaffold_76_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16084..16674)
DNA (591bp) protein (197aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=2 Tax=Clostridium botulinum E RepID=B2V4I2_CLOBA rbh
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KIL09486.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" so
NECEvent2014_8_4_scaffold_76_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16658..17995)
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO n=3 Tax=Clostridium butyricum RepID=B1QUW4_CLOBU
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
rimO; ribosomal protein S12 methylthiotransferase RimO
NECEvent2014_8_4_scaffold_76_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18074..20446)
DNA (2373bp) protein (791aa)
cell division protein FtsK n=1 Tax=Clostridium beijerinckii RepID=UPI0002ED1E22
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:AIY82298.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sulli
ftsK/SpoIIIE family protein
NECEvent2014_8_4_scaffold_76_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20527..21252)
DNA (726bp) protein (242aa)
Clp protease n=3 Tax=Clostridium butyricum RepID=B1QUW6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ36045.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
peptidase S14, ClpP
NECEvent2014_8_4_scaffold_76_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21324..22520)
DNA (1197bp) protein (399aa)
dapG; aspartokinase 1 (EC:2.7.2.4)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
Aspartokinase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JHP2_CLOBU
NECEvent2014_8_4_scaffold_76_25
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22538..22819)
DNA (282bp) protein (94aa)
Sporulation protein, YlmC/YmxH family n=2 Tax=Clostridium botulinum E RepID=B2V4H7_CLOBA
PRC-barrel domain-containing protein
Photosystem reaction center subunit H {ECO:0000313|EMBL:KIL09481.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;
NECEvent2014_8_4_scaffold_76_26
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22877..24184)
DNA (1308bp) protein (436aa)
Zinc protease n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G6U7_CLOPA
Zinc protease {ECO:0000313|EMBL:ETD71402.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
peptidase M16 domain-containing protein
NECEvent2014_8_4_scaffold_76_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24308..26419)
DNA (2112bp) protein (704aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=2 Tax=Clostridium botulinum B RepID=PNP_CLOBB rbh
NECEvent2014_8_4_scaffold_76_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(26504..26767)
DNA (264bp) protein (88aa)
30S ribosomal protein S15 n=2 Tax=Clostridium botulinum B RepID=RS15_CLOBB
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
NECEvent2014_8_4_scaffold_76_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26888..27814)
DNA (927bp) protein (309aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=536233 species="Bacteria; Firmicutes;
ribF; bifunctional riboflavin kinase/FMN adenylyltransferase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UX65_CLOBO rbh
NECEvent2014_8_4_scaffold_76_30
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27831..28706)
DNA (876bp) protein (292aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) s
truB; tRNA pseudouridine synthase B (EC:5.4.99.-)
tRNA pseudouridine synthase B n=1 Tax=Clostridium sp. DL-VIII RepID=G7LYK4_9CLOT
Displaying items 1-30 of 41 in total

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