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NECEvent2014_8_6_Klebsiella_pneumoniae-rel_57_348_partial

NECEvent2014_8_6_Klebsiella_57_365
In projects: NECEvent2014_8_6

Consensus taxonomy: Klebsiella  →  Enterobacteriales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_8_6_UNK

Properties

Avg. coverage: 364.80 Longest contig: 84.10 Kbp Bin length: 5.79 Mbp GC content: 56.74 %
Contigs count: 546 Features count: 6107 rRNAs count: 0 tRNAs count: 57

Genome completeness

partial RP 26 / 55 MC: 4 BSCG 22 / 51 ASCG 10 / 38 MC: 2

Description

Probably has low coverage minor strain resolvable by TS ESOM

Displaying items 251-300 of 546 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_6_scaffold_1236 178_006_scaffold_1236
Species: Klebsiella pneumoniae (50%)
2 3940 bp 52.87 270.19 88.71
NECEvent2014_8_6_scaffold_539 178_006_scaffold_539
Genus: Klebsiella (90.91%)
11 9429 bp 56.84 401.91 88.77
NECEvent2014_8_6_scaffold_1894 178_006_scaffold_1894
Species: Klebsiella pneumoniae (62.5%)
8 6003 bp 59.00 420.74 88.86
NECEvent2014_8_6_scaffold_356 178_006_scaffold_356
Species: Klebsiella pneumoniae (81.82%)
11 13485 bp 57.13 479.92 88.92
NECEvent2014_8_6_scaffold_1014 178_006_scaffold_1014
Order: Enterobacteriales (85.71%)
7 5636 bp 60.34 302.40 88.95
NECEvent2014_8_6_scaffold_2182 178_006_scaffold_2182
Species: Klebsiella pneumoniae (100%)
3 1993 bp 53.89 277.20 88.96
NECEvent2014_8_6_scaffold_269 178_006_scaffold_269
Genus: Klebsiella (91.67%)
36 38129 bp 58.52 415.86 89.02
NECEvent2014_8_6_scaffold_367 178_006_scaffold_367
Genus: Klebsiella (98.04%)
51 45787 bp 59.49 307.75 89.05
NECEvent2014_8_6_scaffold_207 178_006_scaffold_207
Genus: Klebsiella (98.57%)
70 66463 bp 55.29 486.78 89.10
NECEvent2014_8_6_scaffold_2107 178_006_scaffold_2107
Species: Klebsiella pneumoniae (100%)
2 2094 bp 59.46 512.82 89.11
NECEvent2014_8_6_scaffold_283 178_006_scaffold_283
Genus: Klebsiella (97.56%)
41 40688 bp 57.39 363.87 89.11
NECEvent2014_8_6_scaffold_254 178_006_scaffold_254
Genus: Klebsiella (91.43%)
35 33340 bp 56.71 390.03 89.22
NECEvent2014_8_6_scaffold_1812 178_006_scaffold_1812
Species: Klebsiella pneumoniae (66.67%)
3 2495 bp 60.88 345.99 89.22
NECEvent2014_8_6_scaffold_801 178_006_scaffold_801
Genus: Klebsiella (100%)
12 10382 bp 57.21 461.50 89.23
NECEvent2014_8_6_scaffold_1257 178_006_scaffold_1257
Species: Klebsiella pneumoniae (60%)
5 4606 bp 47.59 781.59 89.23
NECEvent2014_8_6_scaffold_888 178_006_scaffold_888
Genus: Klebsiella (100%)
12 9078 bp 56.50 335.94 89.26
NECEvent2014_8_6_scaffold_431 178_006_scaffold_431
Species: Klebsiella pneumoniae (55.56%)
9 11518 bp 59.51 355.69 89.29
NECEvent2014_8_6_scaffold_465 178_006_scaffold_465
Species: Klebsiella pneumoniae (66.67%)
9 10991 bp 46.51 292.48 89.31
NECEvent2014_8_6_scaffold_314 178_006_scaffold_314
Species: Klebsiella pneumoniae (50%)
28 32538 bp 57.72 465.28 89.33
NECEvent2014_8_6_scaffold_142 178_006_scaffold_142
Genus: Klebsiella (97.22%)
36 38339 bp 58.73 368.55 89.35
NECEvent2014_8_6_scaffold_290 178_006_scaffold_290
Species: Klebsiella variicola (51.35%)
37 39937 bp 56.78 479.19 89.38
NECEvent2014_8_6_scaffold_657 178_006_scaffold_657
Species: Klebsiella pneumoniae (56.25%)
16 16507 bp 57.26 356.21 89.39
NECEvent2014_8_6_scaffold_1955 178_006_scaffold_1955
Species: Klebsiella pneumoniae (50%)
2 2278 bp 47.67 2408.76 89.42
NECEvent2014_8_6_scaffold_213 178_006_scaffold_213
Species: Klebsiella pneumoniae (60%)
25 22907 bp 61.28 272.92 89.42
NECEvent2014_8_6_scaffold_609 178_006_scaffold_609
Genus: Klebsiella (94.12%)
17 21276 bp 56.42 355.61 89.45
NECEvent2014_8_6_scaffold_715 178_006_scaffold_715
Genus: Klebsiella (80%)
5 7140 bp 60.71 408.70 89.45
NECEvent2014_8_6_scaffold_1149 178_006_scaffold_1149
Species: Klebsiella pneumoniae (66.67%)
6 4258 bp 52.70 109.91 89.48
NECEvent2014_8_6_scaffold_719 178_006_scaffold_719
Species: Klebsiella pneumoniae (50%)
12 10455 bp 59.27 326.13 89.50
NECEvent2014_8_6_scaffold_126 178_006_scaffold_126
Genus: Klebsiella (93.75%)
32 37808 bp 56.90 426.54 89.51
NECEvent2014_8_6_scaffold_1352 178_006_scaffold_1352
Species: Klebsiella pneumoniae (66.67%)
6 3586 bp 63.33 266.45 89.51
NECEvent2014_8_6_scaffold_2206 178_006_scaffold_2206
Species: Klebsiella variicola (66.67%)
3 1963 bp 58.79 407.44 89.56
NECEvent2014_8_6_scaffold_422 178_006_scaffold_422
Species: Klebsiella pneumoniae (69.23%)
13 11757 bp 57.86 464.72 89.61
NECEvent2014_8_6_scaffold_301 178_006_scaffold_301
Genus: Klebsiella (80%)
35 29419 bp 57.39 455.62 89.64
NECEvent2014_8_6_scaffold_2389 178_006_scaffold_2389
Species: Klebsiella pneumoniae (66.67%)
3 1750 bp 56.46 304.11 89.66
NECEvent2014_8_6_scaffold_99 178_006_scaffold_99
Species: Klebsiella pneumoniae (83.87%)
31 36329 bp 52.78 142.01 89.69
NECEvent2014_8_6_scaffold_509 178_006_scaffold_509
Genus: Enterobacter (55.56%)
9 10062 bp 54.66 360.21 89.74
NECEvent2014_8_6_scaffold_150 178_006_scaffold_150
Genus: Enterobacter (77.14%)
35 26066 bp 49.14 380.09 89.75
NECEvent2014_8_6_scaffold_680 178_006_scaffold_680
Species: Klebsiella pneumoniae (66.67%)
9 9418 bp 55.09 495.89 89.80
NECEvent2014_8_6_scaffold_1143 178_006_scaffold_1143
Species: Klebsiella variicola (66.67%)
6 4283 bp 49.12 110.49 89.80
NECEvent2014_8_6_scaffold_250 178_006_scaffold_250
Species: Klebsiella variicola (51.28%)
39 38066 bp 60.45 302.70 89.83
NECEvent2014_8_6_scaffold_591 178_006_scaffold_591
Species: Klebsiella variicola (63.64%)
11 8722 bp 59.69 394.00 89.84
NECEvent2014_8_6_scaffold_220 178_006_scaffold_220
Genus: Klebsiella (96.36%)
55 54796 bp 57.08 369.69 89.85
NECEvent2014_8_6_scaffold_232 178_006_scaffold_232
Species: Klebsiella pneumoniae (51.22%)
41 38419 bp 56.26 479.21 89.85
NECEvent2014_8_6_scaffold_898 178_006_scaffold_898
Species: Klebsiella pneumoniae (66.67%)
6 5599 bp 60.87 349.54 89.86
NECEvent2014_8_6_scaffold_952 178_006_scaffold_952
Genus: Klebsiella (100%)
6 5265 bp 59.13 404.64 89.86
NECEvent2014_8_6_scaffold_2199 178_006_scaffold_2199
Species: Klebsiella pneumoniae (50%)
4 1973 bp 61.43 404.92 89.86
NECEvent2014_8_6_scaffold_1274 178_006_scaffold_1274
Species: Klebsiella pneumoniae (80%)
5 6394 bp 59.46 475.29 89.90
NECEvent2014_8_6_scaffold_380 178_006_scaffold_380
Genus: Klebsiella (92%)
25 23435 bp 59.99 312.39 89.90
NECEvent2014_8_6_scaffold_209 178_006_scaffold_209
Genus: Klebsiella (97.06%)
34 31676 bp 56.53 399.95 89.96
NECEvent2014_8_6_scaffold_563 178_006_scaffold_563
Species: Klebsiella variicola (56.25%)
16 14900 bp 55.48 432.47 89.98
Displaying items 251-300 of 546 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.