ggKbase home page

NECEvent2014_8_6_scaffold_101

Alias: 178_006_scaffold_101

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_6_scaffold_101_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..284
DNA (282bp) protein (94aa)
MarR-family transcriptional regulator n=4 Tax=Clostridium butyricum RepID=B1QZY9_CLOBU
Transcriptional regulator, MarR family {ECO:0000313|EMBL:KJZ87237.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBU
MarR-family transcriptional regulator
NECEvent2014_8_6_scaffold_101_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(343..1140)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ACQ2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30549.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
endonuclease/exonuclease/phosphatase family protein
NECEvent2014_8_6_scaffold_101_3
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1146..2801)
DNA (1656bp) protein (552aa)
pts system, iibc component (EC:2.7.1.69)
Pts system, iibc component n=2 Tax=Clostridium butyricum RepID=M8JES7_CLOBU rbh
ATPase component of general energizing module of ECF transporter {ECO:0000313|EMBL:KJZ97379.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
NECEvent2014_8_6_scaffold_101_4
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2928..4601)
DNA (1674bp) protein (558aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sourc
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AEH8_CLOBU rbh
glycosyl hydrolase family protein
NECEvent2014_8_6_scaffold_101_5
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4867..5868)
DNA (1002bp) protein (334aa)
Transcriptional regulator, LacI family n=4 Tax=Clostridium butyricum RepID=B1QZY5_CLOBU rbh
Maltose operon transcriptional repressor MalR, LacI family {ECO:0000313|EMBL:KJZ87202.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source=
alanine racemase
NECEvent2014_8_6_scaffold_101_6
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6117..7709)
DNA (1593bp) protein (531aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:
malQ1; 4-alpha-glucanotransferase MalQ (EC:2.4.1.25)
4-alpha-glucanotransferase n=3 Tax=Clostridium butyricum RepID=M8K9J8_CLOBU rbh
NECEvent2014_8_6_scaffold_101_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7868..8770)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ACP7_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30544.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
binding-protein-dependent transport system inner membrane protein
NECEvent2014_8_6_scaffold_101_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8770..9636)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A210_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30543.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
binding-protein-dependent transport system inner membrane protein
NECEvent2014_8_6_scaffold_101_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9732..11069)
DNA (1338bp) protein (446aa)
UPI0003D5D09A related cluster n=1 Tax=unknown RepID=UPI0003D5D09A rbh
Maltose-binding protein {ECO:0000313|EMBL:ETI91675.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
extracellular solute-binding protein
NECEvent2014_8_6_scaffold_101_10
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11377..11637)
DNA (261bp) protein (87aa)
Excinuclease ABC, C subunit domain protein n=2 Tax=Clostridium butyricum RepID=M8J5W5_CLOBU
GIY-YIG domain protein {ECO:0000313|EMBL:KJZ87212.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative endonuclease containing a URI domain
NECEvent2014_8_6_scaffold_101_11
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11849..13510)
DNA (1662bp) protein (554aa)
Ketol-acid reductoisomerase {ECO:0000313|EMBL:KJZ97376.1}; EC=1.1.1.86 {ECO:0000313|EMBL:KJZ97376.1};; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridi
ilvB1; acetolactate synthase large subunit (EC:2.2.1.6)
UPI0003D677F5 related cluster n=1 Tax=unknown RepID=UPI0003D677F5 rbh
NECEvent2014_8_6_scaffold_101_12
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13678..15336)
DNA (1659bp) protein (553aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012};; TaxID=1523154 species="Bacteria; Firmicutes;
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=4 Tax=Clostridium butyricum RepID=B1QZX8_CLOBU rbh
NECEvent2014_8_6_scaffold_101_13
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15343..16440)
DNA (1098bp) protein (366aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|H
leuB; 3-isopropylmalate dehydrogenase (EC:1.1.1.85)
UPI0003D61BDA related cluster n=1 Tax=unknown RepID=UPI0003D61BDA rbh
NECEvent2014_8_6_scaffold_101_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16617..17102)
DNA (486bp) protein (162aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate is
leuD; 3-isopropylmalate dehydratase small subunit LeuD (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=4 Tax=Clostridium butyricum RepID=B1QZX6_CLOBU rbh
NECEvent2014_8_6_scaffold_101_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17116..18375)
DNA (1260bp) protein (420aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate is
leuC2; 3-isopropylmalate dehydratase large subunit LeuC (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=2 Tax=Clostridium butyricum RepID=M8J5X1_CLOBU rbh
NECEvent2014_8_6_scaffold_101_16
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18390..19985)
DNA (1596bp) protein (532aa)
(R)-citramalate synthase {ECO:0000313|EMBL:KJZ87143.1}; EC=2.3.1.182 {ECO:0000313|EMBL:KJZ87143.1};; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
AIPM/hcit synthase family transferase (EC:2.3.3.-)
2-isopropylmalate synthase/homocitrate synthase family protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K9L0_CLOBU rbh
NECEvent2014_8_6_scaffold_101_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20098..20604)
DNA (507bp) protein (169aa)
ilvH; acetolactate synthase small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit n=2 Tax=Clostridium butyricum RepID=M8K1H5_CLOBU rbh
Acetolactate synthase, small subunit {ECO:0000313|EMBL:ENZ30534.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum
NECEvent2014_8_6_scaffold_101_18
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21118..21531)
DNA (414bp) protein (138aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=M8JET9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87208.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
hypothetical protein
NECEvent2014_8_6_scaffold_101_19
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21711..23057)
DNA (1347bp) protein (449aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1523154 species="Bacter
Phosphoglucosamine mutase n=2 Tax=Clostridium butyricum RepID=M8JG57_CLOBU rbh
glmM; phosphoglucosamine mutase
NECEvent2014_8_6_scaffold_101_20
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23307..23621)
DNA (315bp) protein (105aa)
TrpR-like protein YerC/YecD n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YSD8_CLOBU
TrpR-like protein YerC/YecD {ECO:0000313|EMBL:ENZ30531.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
TrpR like protein, YerC/YecD
NECEvent2014_8_6_scaffold_101_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23714..24550)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YSX4_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30530.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
HTH DNA-binding protein
NECEvent2014_8_6_scaffold_101_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24725..26971)
DNA (2247bp) protein (749aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ACN2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30529.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
peptidase M56, BlaR1
NECEvent2014_8_6_scaffold_101_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27005..29239)
DNA (2235bp) protein (745aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A1Z2_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30528.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
beta-lactamase regulatory protein 1
NECEvent2014_8_6_scaffold_101_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29268..29660)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AEF6_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30527.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
penicillinase repressor
NECEvent2014_8_6_scaffold_101_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29869..30033)
DNA (165bp) protein (55aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1QZW5_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30526.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_6_scaffold_101_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30087..31430)
DNA (1344bp) protein (448aa)
Mate efflux family protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K1I5_CLOBU rbh
MATE efflux family protein {ECO:0000313|EMBL:ENZ30525.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
putative efflux protein, MATE family
NECEvent2014_8_6_scaffold_101_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31628..33802)
DNA (2175bp) protein (725aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JEU8_CLOBU rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ30524.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
methyl-accepting chemotaxis protein
NECEvent2014_8_6_scaffold_101_28
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34079..35104)
DNA (1026bp) protein (342aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomerore
ilvC; ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=4 Tax=Clostridium butyricum RepID=B1QZW2_CLOBU rbh
Displaying 28 items

View Taxonomy