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NECEvent2014_8_6_scaffold_201

Alias: 178_006_scaffold_201

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_6_scaffold_201_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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214..906
DNA (693bp) protein (231aa)
Uncharacterized HTH-type transcriptional regulator YieP n=518 Tax=Enterobacteriaceae RepID=YIEP_ECOLI rbh
transcriptional regulator
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:EFU99122.1}; TaxID=670892 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" so
NECEvent2014_8_6_scaffold_201_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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929..2356
DNA (1428bp) protein (476aa)
Probable transport protein HsrA n=246 Tax=Enterobacteriaceae RepID=HSRA_ECOLI rbh
drug resistance transporter EmrB/QacA subfamily
Putative transport protein hsrA {ECO:0000313|EMBL:KDY51352.1}; TaxID=1444126 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Esche
NECEvent2014_8_6_scaffold_201_3
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2322..3314)
DNA (993bp) protein (331aa)
Ribose operon repressor n=544 Tax=Enterobacteriaceae RepID=RBSR_ECO57 rbh
rbsR; transcriptional repressor RbsR
Regulator for rbs operon {ECO:0000313|EMBL:CDC75689.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.
NECEvent2014_8_6_scaffold_201_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3318..4247)
DNA (930bp) protein (310aa)
ribokinase (EC:2.7.1.15)
Ribokinase {ECO:0000313|EMBL:CDK80101.1}; EC=2.7.1.15 {ECO:0000313|EMBL:CDK80101.1};; TaxID=1432548 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Esche
Ribokinase n=95 Tax=Enterobacteriaceae RepID=B5YY10_ECO5E rbh
NECEvent2014_8_6_scaffold_201_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4373..5263)
DNA (891bp) protein (297aa)
D-ribose periplasmic binding protein n=1147 Tax=Enterobacteriaceae RepID=C3SL12_ECOLX rbh
D-ribose transporter subunit RbsB
D-ribose-binding periplasmic protein {ECO:0000313|EMBL:EGI49061.1}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="E
NECEvent2014_8_6_scaffold_201_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5288..6253)
DNA (966bp) protein (322aa)
Ribose transport system permease protein RbsC n=1343 Tax=Enterobacteriaceae RepID=RBSC_ECO57 rbh
rbsC; high-affinity ribose transport system permease protein RbsC
Ribose ABC transporter permease {ECO:0000313|EMBL:ETE24889.1}; TaxID=1417796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Esche
NECEvent2014_8_6_scaffold_201_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6258..7763)
DNA (1506bp) protein (502aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1116136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enteroba
Ribose import ATP-binding protein RbsA n=286 Tax=Enterobacteriaceae RepID=RBSA_ECOL5 rbh
D-ribose transporter ATP-binding protein
NECEvent2014_8_6_scaffold_201_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7771..8190)
DNA (420bp) protein (140aa)
D-ribose pyranase {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00011477}; EC=5.4.99.62 {ECO:0000256|HAMAP-Rule:MF_01661, ECO:0000256|SAAS:SAAS00166232};; TaxID=1444235 species="Bacteria; Pro
D-ribose pyranase n=370 Tax=Escherichia RepID=RBSD_ECO57
rbsD; D-ribose high-affinity transporter
NECEvent2014_8_6_scaffold_201_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8357..10225)
DNA (1869bp) protein (623aa)
Low affinity potassium transport system protein kup n=924 Tax=Enterobacteriaceae RepID=KUP_ECO24 rbh
potassium uptake protein
Low affinity potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; Kup system potassium uptake protein {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1169664 species="Bacteria; Proteobac
NECEvent2014_8_6_scaffold_201_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10448..11944
DNA (1497bp) protein (499aa)
ATPase RavA {ECO:0000256|HAMAP-Rule:MF_01625}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01625};; Regulatory ATPase variant A {ECO:0000256|HAMAP-Rule:MF_01625}; TaxID=1444155 species="Bacteria; Proteobact
ATPase RavA n=256 Tax=Enterobacteriaceae RepID=RAVA_ECOBW rbh
yieN; fused putative transcriptional regulator: sigma54 activator protein/hypothetical protein
NECEvent2014_8_6_scaffold_201_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11938..13389
DNA (1452bp) protein (484aa)
Protein ViaA n=554 Tax=Enterobacteriaceae RepID=VIAA_ECO57 rbh
hypothetical protein
Protein ViaA {ECO:0000256|HAMAP-Rule:MF_01626, ECO:0000256|SAAS:SAAS00012203}; VWA domain protein interacting with AAA ATPase {ECO:0000256|HAMAP-Rule:MF_01626}; TaxID=1169340 species="Bacteria; Proteo
NECEvent2014_8_6_scaffold_201_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13394..14386)
DNA (993bp) protein (331aa)
asnA; aspartate--ammonia ligase (asparagine synthetase A) (EC:6.3.1.1)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0
Aspartate--ammonia ligase n=240 Tax=Escherichia RepID=ASNA_ECO81 rbh
NECEvent2014_8_6_scaffold_201_13
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14538..14996
DNA (459bp) protein (153aa)
Regulatory protein AsnC n=1413 Tax=Enterobacteriaceae RepID=ASNC_ECO57
hypothetical protein
Regulatory protein AsnC {ECO:0000313|EMBL:EIQ24365.1}; TaxID=766138 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 9
NECEvent2014_8_6_scaffold_201_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15086..15529
DNA (444bp) protein (148aa)
Protein MioC n=109 Tax=Escherichia RepID=MIOC_ECOLI
mioC; FMN-binding protein MioC
Protein mioC {ECO:0000313|EMBL:ELD66334.1}; TaxID=1181778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE234.
NECEvent2014_8_6_scaffold_201_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15908..17797
DNA (1890bp) protein (630aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=815 Tax=Enterobacteriaceae RepID=MNMG_ECO24 rbh
glucose inhibited division protein A
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1281241 species="Bacte
NECEvent2014_8_6_scaffold_201_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17861..18484
DNA (624bp) protein (208aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltran
Ribosomal RNA small subunit methyltransferase G n=1222 Tax=Enterobacteriaceae RepID=RSMG_ECO27 rbh
gidB; methyltransferase GidB
NECEvent2014_8_6_scaffold_201_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19101..19481
DNA (381bp) protein (127aa)
ATP F0F1 synthase subunit I {ECO:0000313|EMBL:EZE09775.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EZE09775.1};; TaxID=1446753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enteroba
UPI0003D5A811 related cluster n=1 Tax=unknown RepID=UPI0003D5A811
atpI; membrane-bound ATP synthase
NECEvent2014_8_6_scaffold_201_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19490..20305
DNA (816bp) protein (272aa)
F0F1 ATP synthase subunit A (EC:3.6.3.14)
ATP synthase subunit a n=835 Tax=Enterobacteriaceae RepID=ATP6_ECO24 rbh
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:
Displaying 18 items

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