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NECEvent2014_8_7_scaffold_43

Alias: 178_007_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_7_scaffold_43_trna_1
unknown

Not on your lists

4..93
DNA (90bp)
transferRNA
NECEvent2014_8_7_scaffold_43_trna_2
unknown

Not on your lists

100..173
DNA (74bp)
transferRNA
NECEvent2014_8_7_scaffold_43_1
Citrobacter koseri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(256..726)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Shigella flexneri RepID=Q83JZ2_SHIFL
conserved protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:ABV15112.1}; TaxID=290338 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter ko
NECEvent2014_8_7_scaffold_43_trna_3
unknown

Not on your lists

375..448
DNA (74bp)
transferRNA
NECEvent2014_8_7_scaffold_43_trna_4
unknown

Not on your lists

514..587
DNA (74bp)
transferRNA
NECEvent2014_8_7_scaffold_43_trna_5
unknown

Not on your lists

789..862
DNA (74bp)
transferRNA
NECEvent2014_8_7_scaffold_43_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1146..1712
DNA (567bp) protein (189aa)
Fructose-1-phosphate phosphatase YqaB n=145 Tax=Enterobacteriaceae RepID=YQAB_ECOLI rbh
hypothetical protein
Beta-phosphoglucomutase family hydrolase {ECO:0000313|EMBL:ESA67962.1}; TaxID=1268978 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" sour
NECEvent2014_8_7_scaffold_43_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1709..2137
DNA (429bp) protein (143aa)
Inner membrane protein YqaA n=466 Tax=Enterobacteriaceae RepID=YQAA_ECOLI
hypothetical protein
Inner membrane protein yqaA {ECO:0000313|EMBL:KEL23101.1}; TaxID=1444279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherich
NECEvent2014_8_7_scaffold_43_4
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2210..3766
DNA (1557bp) protein (519aa)
Glutamate--cysteine ligase (EC:6.3.2.2)
Glutamate--cysteine ligase {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_00578, ECO:0000256|RuleBase:RU004391};; Gamma-ECS {ECO:0000256|HAMAP-
Glutamate--cysteine ligase n=578 Tax=Enterobacteriaceae RepID=GSH1_ECO45 rbh
NECEvent2014_8_7_scaffold_43_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3916..4431
DNA (516bp) protein (172aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO
S-ribosylhomocysteine lyase n=546 Tax=Enterobacteriaceae RepID=LUXS_ECO24 rbh
S-ribosylhomocysteinase
NECEvent2014_8_7_scaffold_43_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4495..6033)
DNA (1539bp) protein (513aa)
Multidrug export protein EmrB n=871 Tax=Enterobacteriaceae RepID=EMRB_ECO57 rbh
EmrB/QacA family drug resistance transporter
Multidrug resistance protein B {ECO:0000313|EMBL:KEL23098.1}; TaxID=1444279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escher
NECEvent2014_8_7_scaffold_43_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6050..7222)
DNA (1173bp) protein (391aa)
Multidrug export protein EmrA n=68 Tax=Escherichia RepID=EMRA_ECOLI rbh
emrA; multidrug efflux system
Multidrug resistance protein A {ECO:0000313|EMBL:EQX50254.1}; TaxID=1281204 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escher
NECEvent2014_8_7_scaffold_43_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7349..7879)
DNA (531bp) protein (177aa)
Transcriptional repressor MprA n=1233 Tax=Enterobacteriaceae RepID=MPRA_ECO57 rbh
mprA; transcriptional repressor MprA
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ESA85898.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source
NECEvent2014_8_7_scaffold_43_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7970..8305)
DNA (336bp) protein (112aa)
Uncharacterized protein YgaH n=407 Tax=Enterobacteriaceae RepID=YGAH_ECOLI
ygaH; hypothetical protein
L-valine exporter {ECO:0000313|EMBL:EZE25899.1}; TaxID=1446580 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O1
NECEvent2014_8_7_scaffold_43_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8295..9032)
DNA (738bp) protein (246aa)
Inner membrane protein YgaZ n=230 Tax=Escherichia RepID=YGAZ_ECOLI rbh
ygaZ; transporter
Inner membrane protein YgaZ {ECO:0000313|EMBL:KEO22733.1}; TaxID=1444212 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherich
NECEvent2014_8_7_scaffold_43_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9156..10337)
DNA (1182bp) protein (394aa)
MFS permease protein n=1 Tax=Escherichia coli EC4100B RepID=E7UQ86_ECOLX rbh
ygaY; Putative transport protein
Sugar (And other) transporter family protein {ECO:0000313|EMBL:KDY20452.1}; TaxID=1444235 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;"
NECEvent2014_8_7_scaffold_43_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10529..11521)
DNA (993bp) protein (331aa)
Glycine betaine-binding periplasmic protein n=353 Tax=Enterobacteriaceae RepID=PROX_ECO57 rbh
proX; glycine betaine transporter periplasmic subunit
Glycine betaine-binding periplasmic protein {ECO:0000313|EMBL:KEN96473.1}; TaxID=1444153 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" s
NECEvent2014_8_7_scaffold_43_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11579..12643)
DNA (1065bp) protein (355aa)
proW; proW, subunit of proline ABC transporter (EC:3.6.3.32)
Glycine betaine/L-proline transport system permease protein ProW n=176 Tax=Escherichia RepID=PROW_ECOLI rbh
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:ENH01535.1}; TaxID=1116069 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Ente
NECEvent2014_8_7_scaffold_43_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12636..13838)
DNA (1203bp) protein (401aa)
Glycine betaine/L-proline transport ATP-binding protein ProV n=2 Tax=Escherichia coli RepID=S1F2V2_ECOLX rbh
glycine betaine transporter ATP-binding subunit
Glycine betaine/L-proline transport ATP-binding protein proV {ECO:0000313|EMBL:EFU34421.1}; TaxID=679202 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae;
NECEvent2014_8_7_scaffold_43_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14192..15151)
DNA (960bp) protein (320aa)
nrdF; ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1268977 species="Bacteria; Proteobacteria; Gammaproteobacteria; E
Ribonucleoside-diphosphate reductase 2 subunit beta n=435 Tax=Enterobacteriaceae RepID=RIR4_ECOLI rbh
NECEvent2014_8_7_scaffold_43_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15161..17305)
DNA (2145bp) protein (715aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1444181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteria
nrdE; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=133 Tax=Escherichia RepID=A8A3F7_ECOHS rbh
NECEvent2014_8_7_scaffold_43_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17278..17688)
DNA (411bp) protein (137aa)
Protein NrdI n=922 Tax=Enterobacteriaceae RepID=NRDI_ECO57
hypothetical protein
Protein NrdI {ECO:0000256|HAMAP-Rule:MF_00128, ECO:0000256|SAAS:SAAS00020464}; TaxID=1444165 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
NECEvent2014_8_7_scaffold_43_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17685..17930)
DNA (246bp) protein (82aa)
Glutaredoxin-like protein NrdH n=1203 Tax=Enterobacteriaceae RepID=NRDH_ECO57
nrdH; glutaredoxin-like protein NrdH
Glutaredoxin-like protein nrdH {ECO:0000313|EMBL:EQN25346.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escher
NECEvent2014_8_7_scaffold_43_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18178..18507)
DNA (330bp) protein (110aa)
Uncharacterized protein YgaM n=1302 Tax=Enterobacteriaceae RepID=YGAM_ECO57
ygaM; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDV64083.1}; TaxID=1446581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia c
NECEvent2014_8_7_scaffold_43_20
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18659..19003
DNA (345bp) protein (115aa)
Uncharacterized protein YgaC n=1289 Tax=Enterobacteriaceae RepID=YGAC_ECO57
hypothetical protein
Putative cytoplasmic protein {ECO:0000313|EMBL:EIQ34316.1}; TaxID=766140 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boy
NECEvent2014_8_7_scaffold_43_21
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19040..19489)
DNA (450bp) protein (150aa)
L-alanine exporter AlaE n=1049 Tax=Enterobacteriaceae RepID=ALAE_ECO57
ygaW; inner membrane protein
L-alanine exporter AlaE {ECO:0000256|HAMAP-Rule:MF_00914}; TaxID=344609 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boyd
NECEvent2014_8_7_scaffold_43_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20158..20562
DNA (405bp) protein (135aa)
DNA-binding protein StpA n=978 Tax=Enterobacteriaceae RepID=STPA_ECO57
histone family protein nucleoid-structuring protein H-NS
DNA-binding protein {ECO:0000256|PIRNR:PIRNR002096}; TaxID=1444065 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia col
NECEvent2014_8_7_scaffold_43_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20609..21133)
DNA (525bp) protein (175aa)
Inner membrane protein YgaP n=177 Tax=Escherichia RepID=YGAP_ECOLI rbh
ygaP; putative inner membrane protein with hydrolase activity
Inner membrane protein ygaP {ECO:0000313|EMBL:ELD98130.1}; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherich
NECEvent2014_8_7_scaffold_43_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21143..21442)
DNA (300bp) protein (100aa)
Probable HTH-type transcriptional regulator YgaV n=848 Tax=Enterobacteriaceae RepID=YGAV_ECOLI
ArsR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ELE53886.1}; TaxID=1182682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia
NECEvent2014_8_7_scaffold_43_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21625..21783
DNA (159bp) protein (53aa)
UPF0057 membrane protein YqaE n=1411 Tax=Enterobacteriaceae RepID=YQAE_ECO57
yqaE; hypothetical protein
Proteolipid membrane potential modulator family protein {ECO:0000313|EMBL:EMW17925.1}; TaxID=1116125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Esch
Displaying items 1-30 of 45 in total

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