ggKbase home page

PLM1_100_b1_sep16_scaffold_633

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_b1_sep16_scaffold_633_1
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

2..859
DNA (858bp) protein (286aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00037B39B5
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

843..1391
DNA (549bp) protein (183aa)
Cytidylate kinase Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HNR2_ACIS0
cytidylate kinase, putative
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

1379..2335
DNA (957bp) protein (319aa)
Probable tRNA pseudouridine synthase B Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

2332..3471
DNA (1140bp) protein (380aa)
Peptidase, M48 family Tax=Dehalococcoides ethenogenes (strain 195) RepID=Q3Z6L8_DEHE1
peptidase M48
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_trna_1
unknown

Not on your lists

3495..3601
DNA (107bp)
transferRNA Ser
PLM1_100_b1_sep16_scaffold_633_5
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(3607..4641)
DNA (1035bp) protein (345aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
Bifunctional phosphoglucose/phosphomannose isomerase Tax=Thermincola potens (strain JR) RepID=D5XCA5_THEPJ
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_6
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

4771..5475
DNA (705bp) protein (235aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003741C0A
3,4-dihydroxy-2-butanone 4-phosphate synthase
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_7
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5475..5936
DNA (462bp) protein (154aa)
FAD synthase Tax=Aciduliprofundum boonei RepID=UPI0001804673
cytidyltransferase-related enzyme
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_8
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

5995..6420
DNA (426bp) protein (142aa)
ribC; riboflavin synthase (EC:2.5.1.9)
Riboflavin synthase Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IC31_ACIB4
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_9
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

6417..6848
DNA (432bp) protein (144aa)
6,7-dimethyl-8-ribityllumazine synthase Tax=Pyrobaculum oguniense (strain DSM 13380 / JCM 10595 / TE7) RepID=H6Q743_PYROT
ribH; 6,7-dimethyl-8-ribityllumazine synthase
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

6950..7309
DNA (360bp) protein (120aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000360600D
Roadblock/LC7 family protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM1_100_b1_sep16_scaffold_633_11
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(7306..7974)
DNA (669bp) protein (223aa)
Putative metal-dependent phosphoesterase, PHP family Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HNB7_ACIS0
putative metal-dependent phosphoesterase, PHP family
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_12
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

Not on your lists

8067..8471
DNA (405bp) protein (135aa)
Roadblock/LC7 family protein Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQ29_ARCVS
Roadblock/LC7 family protein
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM1_100_b1_sep16_scaffold_633_13
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists


comp(8468..10600)
DNA (2133bp) protein (711aa)
Methionine--tRNA ligase Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TWX7_9EURY
methionyl-tRNA synthetase
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_14
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(10703..12457)
DNA (1755bp) protein (585aa)
hypothetical protein Tax=euryarchaeote SCGC AAA261-G15 RepID=UPI000377311B
putative quinoprotein
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_15
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(12493..13485)
DNA (993bp) protein (331aa)
DNA ligase, putative Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O28549_ARCFU
DNA ligase
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(13492..14268)
DNA (777bp) protein (259aa)
Probable DNA repair protein Toce_0248 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S0A6_THEOJ
DNA end-binding protein Ku
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_17
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

comp(14369..14803)
DNA (435bp) protein (145aa)
Ferredoxin Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Q4_9ARCH
ferredoxin
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM1_100_b1_sep16_scaffold_633_18
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

14983..15273
DNA (291bp) protein (97aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_19
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

Not on your lists

15407..15811
DNA (405bp) protein (135aa)
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM1_100_b1_sep16_scaffold_633_20
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

15930..16151
DNA (222bp) protein (74aa)
Putative RNA-binding protein, contains TRAM domain Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KZJ4_METHD
putative RNA-binding protein, contains TRAM domain
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_21
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

16278..17282
DNA (1005bp) protein (335aa)
Uncharacterized protein Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7TZN2_9EURY
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_22
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

17335..17598
DNA (264bp) protein (88aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_23
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

17614..18600
DNA (987bp) protein (329aa)
Uncharacterized protein Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7T8Y2_9EURY
regulatory protein
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_24
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(18972..19613)
DNA (642bp) protein (214aa)
Phosphoribosylglycinamide formyltransferase Tax=Mitsuokella multacida DSM 20544 RepID=C9KPE6_9FIRM
purN; phosphoribosylglycinamide formyltransferase, folate-dependent
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM1_100_b1_sep16_scaffold_633_25
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(19622..21130)
DNA (1509bp) protein (503aa)
Bifunctional purine biosynthesis protein PurH Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EL26_9FIRM
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_26
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(21293..22237)
DNA (945bp) protein (315aa)
Methylenetetrahydrofolate reductase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RB79_AMMDK
methylenetetrahydrofolate reductase
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_27
unknown

Not on your lists

22568..23326
DNA (759bp) protein (253aa)

This feature has no annotations

PLM1_100_b1_sep16_scaffold_633_28
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(23314..24447)
DNA (1134bp) protein (378aa)
Digeranylgeranylglycerophospholipid reductase Tax=Methanobacterium formicicum DSM 3637 RepID=K2Q9V3_METFO
geranylgeranyl reductase family protein
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM1_100_b1_sep16_scaffold_633_29
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

Not on your lists

comp(24653..25132)
DNA (480bp) protein (160aa)
Tax=RBG_16_Euryarchaeota_68_12_curated
Displaying items 1-30 of 64 in total

View Taxonomy