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PLM1_100_coex_sep16_scaffold_246

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_246_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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1..237
DNA (237bp) protein (79aa)
Putative type III restriction-modification system, Res subunit bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_246_2
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

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299..2929
DNA (2631bp) protein (877aa)
pre-mRNA-splicing ATP-dependent RNA helicase (EC:3.6.1.-) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative helicase (EC:3.6.4.-)
Tax=CSP1_8_Deltaproteobacteria
PLM1_100_coex_sep16_scaffold_246_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3326..4540
DNA (1215bp) protein (405aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ATPase AAA
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_246_4
BJP_08E140C01_10KDA_Chromatiales_49_130, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4631..5308)
DNA (678bp) protein (226aa)
Putative periplasmic protein Tax=Pseudoalteromonas agarivorans S816 RepID=N6VAL1_9GAMM
Tax=BJP_08E140C01_10KDA_Chromatiales_49_130
PLM1_100_coex_sep16_scaffold_246_5
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5312..6154)
DNA (843bp) protein (281aa)
Short-chain dehydrogenase/reductase SDR Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LG16_HALO1
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACY14618.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM1_100_coex_sep16_scaffold_246_6
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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6240..8693
DNA (2454bp) protein (818aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAU1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CBK40350.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_246_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8914..9183)
DNA (270bp) protein (90aa)
7Fe ferredoxin bin=bin7_NC10_sister species=Microlunatus phosphovorus genus=Microlunatus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_246_8
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9204..10205)
DNA (1002bp) protein (334aa)
2OG-Fe(II) oxygenase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GU65_THISH
2OG-Fe(II) oxygenase
2OG-Fe(II) oxygenase {ECO:0000313|EMBL:ACL71348.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM1_100_coex_sep16_scaffold_246_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10202..10555)
DNA (354bp) protein (118aa)
id=14627344 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_246_10
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

10661..10792
DNA (132bp) protein (44aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAU1_9BACT
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
PLM1_100_coex_sep16_scaffold_246_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10839..11357
DNA (519bp) protein (173aa)
Nuclease (SNase domain protein) bin=GWF2_Methylomirabilis_70_14 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nuclease
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_246_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11378..12373
DNA (996bp) protein (332aa)
tRNA-dihydrouridine synthase bin=GWF2_Methylomirabilis_70_14 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nifR3 family TIM-barrel protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_246_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12307..13407)
DNA (1101bp) protein (367aa)
Low-specificity threonine aldolase bin=GWC2_Methylomirabilis_70_24 species=uncultured bacterium FLS18 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
alanine racemase domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_246_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13462..13935)
DNA (474bp) protein (158aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_246_15
unknown

Not on your lists

14112..14912
DNA (801bp) protein (267aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_246_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14923..15378)
DNA (456bp) protein (152aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Robiginitalea biformata genus=Robiginitalea taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_246_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15378..16148)
DNA (771bp) protein (257aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_246_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(16175..16768)
DNA (594bp) protein (198aa)
LemA family protein bin=GWC2_Methylomirabilis_70_24 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
LemA family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_246_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(16789..17724)
DNA (936bp) protein (312aa)
Hydrogenase, large subunit-like protein (HycE-like) bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hydrogenase, large subunit-like protein (HycE-like)
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 19 items

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