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PLM1_100_coex_sep16_scaffold_439

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_439_1

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1..609
DNA (609bp) protein (203aa)
integrase Tax=Psychromonas hadalis RepID=UPI0003B3F081
Marine sediment metagenome DNA, contig: S06H3_L02367 {ECO:0000313|EMBL:GAI16426.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative transposase for insertion sequence element
PLM1_100_coex_sep16_scaffold_439_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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842..1039
DNA (198bp) protein (66aa)
id=3773170 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1046..1873
DNA (828bp) protein (276aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
transport-associated protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(1878..3074)
DNA (1197bp) protein (399aa)
Protease Do bin=GWC2_Methylomirabilis_70_24 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptidase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3164..4021
DNA (858bp) protein (286aa)
Peptidase M56 BlaR1 bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SARP family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_439_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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4048..4422
DNA (375bp) protein (125aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWC2_Methylomirabilis_70_16 species=Citrobacter freundii genus=Citrobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Fis family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_439_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(4607..6718)
DNA (2112bp) protein (704aa)
Adenylate/guanylate cyclase with Chase sensor bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
guanylate cyclase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_439_8
unknown

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6780..7190
DNA (411bp) protein (137aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_439_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7213..8604
DNA (1392bp) protein (464aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component sigma54 specific Fis family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_439_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

8643..9506
DNA (864bp) protein (288aa)
galU; UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP-glucose-1-phosphate uridylyltransferase bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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9639..10853
DNA (1215bp) protein (405aa)
Nicotinate phosphoribosyltransferase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Quinolinate phosphoribosyl transferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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10858..11643
DNA (786bp) protein (262aa)
indole-3-glycerol phosphate synthase (EC:4.1.1.48)
Indole-3-glycerol phosphate synthase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11640..12260
DNA (621bp) protein (207aa)
trpF; N-(5'-phosphoribosyl)anthranilate isomerase (PRAI) (EC:5.3.1.24)
N-(5'-phosphoribosyl)anthranilate isomerase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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12257..13495
DNA (1239bp) protein (413aa)
Tryptophan synthase beta chain bin=GWF2_Methylomirabilis_70_14 species=Caenispirillum salinarum genus=Caenispirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tryptophan synthase subunit beta
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13492..14901
DNA (1410bp) protein (470aa)
Tryptophan synthase alpha chain bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
trpA; tryptophan synthase subunit alpha
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_439_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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14898..16190
DNA (1293bp) protein (431aa)
Bifunctional protein FolC: Folylpolyglutamate synthase and Dihydrofolate synthase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_439_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16318..17172
DNA (855bp) protein (285aa)
Organic solvent tolerance protein bin=GWC2_Methylomirabilis_70_24 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
organic solvent tolerance protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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17169..17588
DNA (420bp) protein (140aa)
Organic solvent tolerance protein bin=GWC2_Methylomirabilis_70_24 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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17588..18691
DNA (1104bp) protein (368aa)
Glutamine--scyllo-inositol transaminase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DegT/DnrJ/EryC1/StrS aminotransferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18693..20015
DNA (1323bp) protein (441aa)
Nucleotide-sugar dehydrogenase bin=GWC2_Methylomirabilis_70_24 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nucleotide-sugar dehydrogenase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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20022..20933
DNA (912bp) protein (304aa)
Putative conserved membrane protein bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
4-hydroxybenzoate polyprenyltransferase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_439_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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20921..22282
DNA (1362bp) protein (454aa)
FAD linked oxidase domain protein bin=GWC2_Methylomirabilis_70_16 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
FAD linked oxidase domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_439_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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22279..23016
DNA (738bp) protein (246aa)
Short chain dehydrogenase bin=GWF2_Methylomirabilis_70_14 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_439_24
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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23043..23408
DNA (366bp) protein (122aa)
Putative uncharacterized protein Tax=uncultured Chloroflexi bacterium HF0200_06I16 RepID=E0XTZ9_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:ETX05182.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_439_25
unknown

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comp(23405..24262)
DNA (858bp) protein (286aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_439_26
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(24299..25039)
DNA (741bp) protein (247aa)
Periplasmic component of an ABC type amino acid transport system-like protein Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXY4_RAMTT
amino acid ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_coex_sep16_scaffold_439_27
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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25198..25947
DNA (750bp) protein (250aa)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8U1B1_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP61851.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
short-chain dehydrogenase/reductase SDR
PLM1_100_coex_sep16_scaffold_439_28
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(26078..26287)
DNA (210bp) protein (70aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WJ7_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:ETX07678.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
PLM1_100_coex_sep16_scaffold_439_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(26284..27831)
DNA (1548bp) protein (516aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase bin=GWC2_Methylomirabilis_70_16 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_439_30
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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27845..29212
DNA (1368bp) protein (456aa)
Glutamate--tRNA ligase bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
gltX; glutamyl-tRNA ligase
Tax=GWC2_Rokubacteria_70_16_curated
Displaying items 1-30 of 35 in total

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