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PLM1_100_coex_sep16_scaffold_487

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_487_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3..362)
DNA (360bp) protein (120aa)
Riboflavin biosynthesis protein RibF bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
riboflavin biosynthesis protein RibF
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_487_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(325..1242)
DNA (918bp) protein (306aa)
tRNA pseudouridine synthase B bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA pseudouridine synthase b
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_487_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1239..2261)
DNA (1023bp) protein (341aa)
Exopolyphosphatase-like enzyme bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exopolyphosphatase-related proteins
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_487_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2258..2608)
DNA (351bp) protein (117aa)
Ribosome-binding factor A bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbfA; ribosome-binding factor A
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_487_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2608..2898)
DNA (291bp) protein (97aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_487_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2920..5457)
DNA (2538bp) protein (846aa)
Translation initiation factor IF-2 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor IF-2
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_487_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5472..5765)
DNA (294bp) protein (98aa)
Putative nucleic-acid-binding protein implicated in transcription termination bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_487_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5762..7096)
DNA (1335bp) protein (445aa)
NusA antitermination factor bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusA antitermination factor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_487_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7093..7569)
DNA (477bp) protein (159aa)
Ribosome maturation factor RimP bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_487_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(7678..9375)
DNA (1698bp) protein (566aa)
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_487_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9376..9708)
DNA (333bp) protein (111aa)
Ferredoxin bin=GWC2_Methylomirabilis_70_24 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ferredoxin
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_487_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9708..10805)
DNA (1098bp) protein (366aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_487_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10818..11504)
DNA (687bp) protein (229aa)
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALJ24 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
membrane-associated zinc metalloprotease
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 13 items

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