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PLM1_30_b1_sep16_scaffold_671

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_30_b1_sep16_scaffold_671_1
Mycobacterium xenopi, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..1204
DNA (1203bp) protein (401aa)
priA; Putative primosomal protein N' PriA (Replication factor Y) (EC:3.6.1.-)
Probable primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium xenopi RIVM700367.;"
Putative primosomal protein N' PriA (Replication factor Y) Tax=Mycobacterium canettii CIPT 140070008 RepID=L0Q7N2_9MYCO
PLM1_30_b1_sep16_scaffold_671_2
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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1234..1812
DNA (579bp) protein (193aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
peptide deformylase Tax=Streptomyces scabrisporus RepID=UPI000371A5F6
PLM1_30_b1_sep16_scaffold_671_3
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1825..2772
DNA (948bp) protein (316aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
Methionyl-tRNA formyltransferase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RVK4_BLASD
fmt; putative methionyl-tRNA formyltransferase
PLM1_30_b1_sep16_scaffold_671_4
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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3038..4000
DNA (963bp) protein (321aa)
rRNA cytosine-C5-methyltransferase Tax=Actinomadura atramentaria RepID=UPI0003726743
Fmu (Sun) domain-containing protein {ECO:0000313|EMBL:EON23759.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
Fmu (Sun) domain-containing protein
PLM1_30_b1_sep16_scaffold_671_5
Streptomyces xiamenensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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4079..4744
DNA (666bp) protein (222aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A817_THECD
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:AKG41708.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces xiamenensis.;"
PLM1_30_b1_sep16_scaffold_671_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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4756..5682
DNA (927bp) protein (309aa)
Response regulator receiver modulated diguanylate cyclase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LUD7_ACIC1
response regulator receiver modulated diguanylate cyclase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_30_b1_sep16_scaffold_671_7
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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5925..7058
DNA (1134bp) protein (378aa)
ribD; riboflavin biosynthesis protein RibD (EC:3.5.4.26 1.1.1.193) bin=bin3_NC10 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_30_b1_sep16_scaffold_671_8
Streptomyces fulvissimus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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7058..7699
DNA (642bp) protein (214aa)
Riboflavin synthase subunit alpha (EC:2.5.1.9)
Uncharacterized protein {ECO:0000313|EMBL:AGK75944.1}; EC=2.5.1.9 {ECO:0000313|EMBL:AGK75944.1};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fulvissimus DSM 40593.;"
Riboflavin synthase subunit alpha Tax=Streptomyces fulvissimus DSM 40593 RepID=N0CLV1_9ACTO
PLM1_30_b1_sep16_scaffold_671_9

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7696..8967
DNA (1272bp) protein (424aa)
Riboflavin biosynthesis protein RibBA Tax=uncultured bacterium A1Q1_fos_862 RepID=L7VZM5_9BACT
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_862.;"
riBBA; riboflavin biosynthesis protein ribBA
PLM1_30_b1_sep16_scaffold_671_10
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

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8964..9440
DNA (477bp) protein (159aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) (Bacillus; tusciae).;"
6,7-dimethyl-8-ribityllumazine synthase Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQB4_KYRT2
PLM1_30_b1_sep16_scaffold_671_11
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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9458..10333
DNA (876bp) protein (292aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
ATP phosphoribosyltransferase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LUD2_ACIC1
PLM1_30_b1_sep16_scaffold_671_12
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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10463..10666
DNA (204bp) protein (68aa)
Conserved domain protein Tax=Nocardioidaceae bacterium Broad-1 RepID=E9USK4_9ACTO
cspD; cold shock-like protein CspD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_30_b1_sep16_scaffold_671_13
BJP_IG2158_Actinobacteria_57_21, Bacteria

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comp(10756..11160)
DNA (405bp) protein (135aa)
hypothetical protein Tax=Frankia sp. Iso899 RepID=UPI0003B70954
hypothetical protein
Tax=BJP_IG2158_Actinobacteria_57_21
PLM1_30_b1_sep16_scaffold_671_14
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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11450..11992
DNA (543bp) protein (181aa)
translation initiation factor IF-3 Tax=Salinispora pacifica RepID=UPI000369ABC1
translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_30_b1_sep16_scaffold_671_15
Candidatus Microthrix parvicella, Candidatus Microthrix, Actinobacteria, Actinobacteria, Bacteria

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12008..12202
DNA (195bp) protein (65aa)
50S ribosomal protein L35 Tax=Candidatus Microthrix parvicella RN1 RepID=R4YZ89_9ACTN
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; Actinobacteria; Candidatus Microthrix.;" source="Candidatus Microthrix parvicella RN1.;"
rpmI; 50S ribosomal protein L35
PLM1_30_b1_sep16_scaffold_671_16
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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12245..12403
DNA (159bp) protein (53aa)
50S ribosomal protein L20 Tax=Actinoalloteichus spitiensis RepID=UPI00036D977B
hypothetical protein
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
Displaying 16 items

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