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PLM1_60_b1_redo_sep16_scaffold_2070

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_2070_1
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(174..554)
DNA (381bp) protein (127aa)
Integrase catalytic region Tax=Frankia sp. (strain EAN1pec) RepID=A8LGJ3_FRASN
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:ABW09932.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_2070_2
Oryza sativa, Oryza, Poales, commelinids, Streptophyta, Viridiplantae

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665..4297
DNA (3633bp) protein (1211aa)
hypothetical protein Tax=Actinomycetospora chiangmaiensis RepID=UPI0003754A29
bimA; intracellular motility protein A
Putative uncharacterized protein P0462E11.13 {ECO:0000313|EMBL:BAC99547.1}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza.;" source="Oryza sativa subsp. japonica (Rice).;"
PLM1_60_b1_redo_sep16_scaffold_2070_3
Streptomyces lydicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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4294..4971
DNA (678bp) protein (226aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI00036BA255
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJT69488.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lydicus A02.;"
PLM1_60_b1_redo_sep16_scaffold_2070_4
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(5601..7214)
DNA (1614bp) protein (538aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00037E32F4
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65247.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
Hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2070_5
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7230..7592)
DNA (363bp) protein (121aa)
hypothetical protein Tax=Nocardiopsis halotolerans RepID=UPI0003605015
Uncharacterized protein {ECO:0000313|EMBL:EFC82856.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
Hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2070_6
Streptomyces zinciresistens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(7642..7872)
DNA (231bp) protein (77aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces zinciresistens K42.;"
DNA methylase N-4/N-6 Tax=Streptomyces zinciresistens K42 RepID=G2G8R8_9ACTO
Hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2070_7
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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7881..8978
DNA (1098bp) protein (366aa)
Integrase family protein Tax=Rhodococcus wratislaviensis IFP 2016 RepID=L2TRR2_9NOCA
Integrase family protein {ECO:0000313|EMBL:ELB92709.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis IFP 2016.;"
integrase family protein
PLM1_60_b1_redo_sep16_scaffold_2070_8
Rhodococcus rhodochrous, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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8978..10324
DNA (1347bp) protein (449aa)
Integrase protein Tax=Rhodococcus wratislaviensis IFP 2016 RepID=L2TNN2_9NOCA
Integrase family protein {ECO:0000313|EMBL:ETT28641.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodochrous ATCC 21198.;"
integrase protein
PLM1_60_b1_redo_sep16_scaffold_2070_9
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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10653..11774
DNA (1122bp) protein (374aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003606D36
Integrase {ECO:0000313|EMBL:KIZ19807.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
integrase family protein
PLM1_60_b1_redo_sep16_scaffold_2070_10
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11775..12107
DNA (333bp) protein (111aa)
XRE family transcriptional regulator Tax=Pseudonocardia sp. P1 RepID=UPI0001FFF212
XRE family transcriptional regulator {ECO:0000313|EMBL:KIZ19808.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2070_11
Streptomyces nodosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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12197..14548
DNA (2352bp) protein (784aa)
hypothetical protein Tax=Pseudonocardia sp. P1 RepID=UPI0001FFF213
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE39398.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces nodosus.;"
PLM1_60_b1_redo_sep16_scaffold_2070_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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14602..14841
DNA (240bp) protein (80aa)
Integrase family protein Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CZC0_PSEUX
integrase protein
Integrase family protein {ECO:0000313|EMBL:AEA25651.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM1_60_b1_redo_sep16_scaffold_2070_13
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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14890..15876
DNA (987bp) protein (329aa)
Cyclic nucleotide-binding protein Tax=Frankia sp. (strain EAN1pec) RepID=A8L388_FRASN
cyclic nucleotide-binding protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:ABW14717.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_2070_14
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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15913..18180
DNA (2268bp) protein (756aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
exodeoxyribonuclease V (EC:3.1.11.5)
Putative exodeoxyribonuclease V Tax=Frankia alni (strain ACN14a) RepID=Q0RI44_FRAAA
PLM1_60_b1_redo_sep16_scaffold_2070_15
unknown

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18691..19011
DNA (321bp) protein (107aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2070_16
Streptomyces sp. WM6386, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(19175..19495)
DNA (321bp) protein (107aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI0003795CF8
Uncharacterized protein {ECO:0000313|EMBL:KKD08085.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. WM6386.;"
Antibiotic biosynthesis monooxygenase
PLM1_60_b1_redo_sep16_scaffold_2070_17
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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19807..20289
DNA (483bp) protein (161aa)
Putative transcriptional regulator Tax=Streptomyces viridochromogenes Tue57 RepID=L8P401_STRVR
Putative transcriptional regulator {ECO:0000313|EMBL:ELS51180.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes Tue57.;"
PLM1_60_b1_redo_sep16_scaffold_2070_18
unknown

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20757..20834
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 18 items

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