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PLM1_60_b1_redo_sep16_scaffold_684

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_684_1
unknown

Not on your lists

1..108
DNA (108bp) protein (36aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_684_2
Saccharomonospora xinjiangensis, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(136..312)
DNA (177bp) protein (59aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2P7F5_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EID53094.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora xinjiangensis XJ-54.;"
Polysaccharide pyruvyl transferase
PLM1_60_b1_redo_sep16_scaffold_684_3
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(588..1142)
DNA (555bp) protein (185aa)
hypothetical protein Tax=Nodosilinea nodulosa RepID=UPI0003761320
Membrane protein-like protein {ECO:0000313|EMBL:CCF85322.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_684_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(1392..1619)
DNA (228bp) protein (76aa)
Adenylate kinase Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HEA2_ACTM4
putative adenylate kinase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM1_60_b1_redo_sep16_scaffold_684_5
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2013..3074)
DNA (1062bp) protein (354aa)
hypothetical protein Tax=Arthrobacter sp. 162MFSha1.1 RepID=UPI00035CC6D5
Oxidoreductase {ECO:0000313|EMBL:KHD74343.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
alcohol dehydrogenase zinc-binding domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_684_6
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3100..3972
DNA (873bp) protein (291aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI00035F6AEB
Xylose isomerase {ECO:0000313|EMBL:AKH85974.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
putative AP endonuclease
PLM1_60_b1_redo_sep16_scaffold_684_7
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4111..5157)
DNA (1047bp) protein (349aa)
ROK family protein Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YB26_THEBD
ROK family protein
ROK family protein {ECO:0000313|EMBL:ADG88386.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM1_60_b1_redo_sep16_scaffold_684_8
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(5609..6922)
DNA (1314bp) protein (438aa)
Uncharacterized protein Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4C0I9_METCG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB68000.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC; 103675 / OCM 69 / GP-6) (Methanothrix concilii).;"
PLM1_60_b1_redo_sep16_scaffold_684_9
Streptomyces pristinaespiralis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7167..7331
DNA (165bp) protein (55aa)
hypothetical protein Tax=Nocardiopsis valliformis RepID=UPI0003483FBB
Response regulator receiver protein {ECO:0000313|EMBL:EDY65235.2}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pristinaespiralis ATCC 25486.;"
LuxR family transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_684_10
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7344..7700)
DNA (357bp) protein (119aa)
hypothetical protein Tax=Amycolatopsis benzoatilytica RepID=UPI00036DC1DD
Uncharacterized protein {ECO:0000313|EMBL:GAM49622.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
CAAX amino terminal protease family protein
PLM1_60_b1_redo_sep16_scaffold_684_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(7697..8230)
DNA (534bp) protein (178aa)
Putative uncharacterized protein Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LZ90_ACIFD
hypothetical protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_684_12
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(8303..10138)
DNA (1836bp) protein (612aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI0003709506
two-component sensor kinase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_684_13
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10171..10680)
DNA (510bp) protein (170aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A3H1_THECD
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein {ECO:0000313|EMBL:ACY96096.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_684_14
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10994..11368
DNA (375bp) protein (125aa)
Putative signal transduction protein with CBS domains Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A5D8_THECD
putative signal transduction protein with CBS domains
Putative signal transduction protein with CBS domains {ECO:0000313|EMBL:ACY96298.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_684_15
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

11382..12386
DNA (1005bp) protein (335aa)
dihydroorotate dehydrogenase 2 (EC:1.3.98.1)
Putative uncharacterized protein bin=GWE2_RBX1_39_32 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
Tax=GWA2_Ignavibacteria_54_16_curated
PLM1_60_b1_redo_sep16_scaffold_684_16
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(12511..13032)
DNA (522bp) protein (174aa)
CBS domain containing protein Tax=Roseiflexus sp. (strain RS-1) RepID=A5UW68_ROSS1
hypothetical protein
CBS domain containing protein {ECO:0000313|EMBL:ABQ90871.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM1_60_b1_redo_sep16_scaffold_684_17
Rhodococcus triatomae, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13233..13463
DNA (231bp) protein (77aa)
Uncharacterized protein Tax=Rhodococcus triatomae BKS 15-14 RepID=M2X2K3_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:EME18028.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus triatomae BKS 15-14.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_684_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(13751..13990)
DNA (240bp) protein (80aa)
hypothetical protein Tax=Hyphomicrobium zavarzinii RepID=UPI000373BD0A
SirA family protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_684_19
unknown

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comp(13987..14295)
DNA (309bp) protein (103aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_684_20
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

14519..14935
DNA (417bp) protein (139aa)
Universal stress protein family protein Tax=Roseobacter sp. AzwK-3b RepID=A6FPU3_9RHOB
universal stress protein UspA-like protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_684_21
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15082..15315
DNA (234bp) protein (78aa)
CBS domain containing membrane protein Tax=Streptomyces violaceusniger Tu 4113 RepID=G2PEH2_STRVO
Uncharacterized protein {ECO:0000313|EMBL:KDS84432.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces roseoflavus).;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_684_22
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

15300..15593
DNA (294bp) protein (98aa)
TQO small subunit DoxD Tax=uncultured bacterium RepID=K1ZF04_9BACT
hypothetical protein
Tax=RBG_16_Actinobacteria_68_21_curated
PLM1_60_b1_redo_sep16_scaffold_684_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15485..15796)
DNA (312bp) protein (104aa)
dihydroorotate dehydrogenase 2; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
dihydroorotate dehydrogenase 2 (EC:1.3.3.1)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM1_60_b1_redo_sep16_scaffold_684_24
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(15793..16326)
DNA (534bp) protein (178aa)
nifJ2; pyruvate:ferredoxin (Flavodoxin) oxidoreductase (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase Tax=Austwickia chelonae NBRC 105200 RepID=K6VQ95_9MICO
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM1_60_b1_redo_sep16_scaffold_684_25
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(16851..17282)
DNA (432bp) protein (144aa)
Ferritin-like protein, rubrerythrin domain-containing Tax=Nitrolancetus hollandicus Lb RepID=I4EJ29_9CHLR
Ferritin-like protein, rubrerythrin domain-containing {ECO:0000313|EMBL:CCF84691.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
rbr; rubrerythrin
PLM1_60_b1_redo_sep16_scaffold_684_26
unknown

Not on your lists

comp(17279..17500)
DNA (222bp) protein (74aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_684_27
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(17536..17979)
DNA (444bp) protein (148aa)
Beta-phosphoglucomutase {ECO:0000313|EMBL:EHN12532.1}; EC=5.4.2.6 {ECO:0000313|EMBL:EHN12532.1};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
Beta-phosphoglucomutase Tax=Patulibacter medicamentivorans RepID=H0E193_9ACTN
HAD hydrolase, IA, variant 3 family protein
PLM1_60_b1_redo_sep16_scaffold_684_28
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

18499..19158
DNA (660bp) protein (220aa)
transcriptional regulatory protein devR bin=bin9_gal15 species=Nocardiopsis alba genus=Nocardiopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
two-component system response regulator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_684_29
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(19366..21570)
DNA (2205bp) protein (735aa)
CoA-binding protein bin=bin7_NC10_sister species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
CoA-binding protein
Tax=CSP1_6_Rokubacteria
PLM1_60_b1_redo_sep16_scaffold_684_30
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(21576..22076)
DNA (501bp) protein (167aa)
CoA-binding protein bin=bin7_NC10_sister species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
N-acetyltransferase GCN5
Tax=CSP1_6_Rokubacteria
Displaying items 1-30 of 37 in total

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