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PLM1_60_b1_redo_sep16_scaffold_1186

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_1186_1
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

166..645
DNA (480bp) protein (160aa)
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI000368365E
Uncharacterized protein {ECO:0000313|EMBL:ETW96640.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
integrase catalytic subunit
PLM1_60_b1_redo_sep16_scaffold_1186_2
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

802..1683
DNA (882bp) protein (294aa)
ATP-binding protein Tax=Dietzia alimentaria RepID=UPI00029A111F
Potential ATP-binding protein {ECO:0000313|EMBL:CDZ89520.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1186_3
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1821..2735
DNA (915bp) protein (305aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B3A8_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ87424.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_60_b1_redo_sep16_scaffold_1186_4
unknown

Not on your lists

2870..3025
DNA (156bp) protein (52aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1186_5
Streptomyces sp. Tu 6176, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3445..4164)
DNA (720bp) protein (240aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI00038035F1
Uncharacterized protein {ECO:0000313|EMBL:EYT79910.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Tu 6176.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1186_6
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4445..5407
DNA (963bp) protein (321aa)
NAD-dependent epimerase/dehydratase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S5F5_GEOOG
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ADB75235.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM1_60_b1_redo_sep16_scaffold_1186_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

5404..6918
DNA (1515bp) protein (505aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI0003738AA9
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB50647.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_60_b1_redo_sep16_scaffold_1186_8
[Brevibacterium] flavum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6884..7723)
DNA (840bp) protein (280aa)
Putative transposase Tax=Corynebacterium glutamicum ATCC 14067 RepID=G6WWC2_CORGT
Transposase {ECO:0000313|EMBL:AKF27306.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="[Brevibacterium] flavum.;"
putative transposase
PLM1_60_b1_redo_sep16_scaffold_1186_9
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7839..8093)
DNA (255bp) protein (85aa)
Putative uncharacterized protein Tax=Frankia sp. (strain EAN1pec) RepID=A8LG78_FRASN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW15711.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_1186_10
Mycobacterium rhodesiae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9175..9384)
DNA (210bp) protein (70aa)
XRE family transcriptional regulator Tax=Mycobacterium RepID=H1KB80_9MYCO
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AEV73757.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rhodesiae (strain NBB3).;"
PLM1_60_b1_redo_sep16_scaffold_1186_11
Mycobacterium intracellulare, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9339..9500)
DNA (162bp) protein (54aa)
hypothetical protein Tax=Amycolatopsis alba RepID=UPI00036174CA
Cro/C1-type HTH DNA-binding domain protein {ECO:0000313|EMBL:ETZ30180.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium intracellulare MIN_052511_1280.;"
putative transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_1186_12
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9501..10574)
DNA (1074bp) protein (358aa)
Integrase family protein Tax=Frankia sp. (strain EAN1pec) RepID=A8LG77_FRASN
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ABW15710.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_1186_13
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10657..10890
DNA (234bp) protein (78aa)
Integrase catalytic region Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6SE45_INTC7
integrase catalytic subunit
Integrase core domain protein {ECO:0000313|EMBL:ETZ97278.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii 732.;"
PLM1_60_b1_redo_sep16_scaffold_1186_14
Mycobacterium xenopi, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11076..11387
DNA (312bp) protein (104aa)
Transposase Tax=Mycobacterium xenopi RIVM700367 RepID=I0RSS4_MYCXE
Transposase {ECO:0000313|EMBL:EID14177.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium xenopi RIVM700367.;"
transposase
PLM1_60_b1_redo_sep16_scaffold_1186_15
Mycobacterium xenopi, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11348..12139
DNA (792bp) protein (264aa)
IstB domain-containing protein ATP-binding protein Tax=Mycobacterium xenopi RIVM700367 RepID=I0RSS3_MYCXE
IstB domain-containing protein ATP-binding protein {ECO:0000313|EMBL:EID14176.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium xenopi RIVM700367.;"
IstB domain-containing protein ATP-binding protein
PLM1_60_b1_redo_sep16_scaffold_1186_16
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12234..12596
DNA (363bp) protein (121aa)
Putative uncharacterized protein Tax=Frankia sp. (strain CcI3) RepID=Q2JAX8_FRASC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDA40439.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
PLM1_60_b1_redo_sep16_scaffold_1186_17
Frankia sp. CcI6, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12590..13102
DNA (513bp) protein (171aa)
UPI0003D013F0 related cluster Tax=unknown RepID=UPI0003D013F0
Uncharacterized protein {ECO:0000313|EMBL:ETA01163.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CcI6.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1186_18

Not on your lists

13099..13734
DNA (636bp) protein (212aa)
Uncharacterized protein (Fragment) Tax=mine drainage metagenome RepID=T1CUH8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EQD72569.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1186_19
Terrabacter sp. DBF63, Terrabacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13962..15212)
DNA (1251bp) protein (417aa)
Transposase IS204/IS1001/IS1096/IS1165 family protein Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6S8T8_INTC7
Putative transposase {ECO:0000313|EMBL:BAJ39925.1}; Transposase {ECO:0000313|EMBL:BAC54155.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Terrabacter.;" source="Terrabacter sp. (strain DBF63).;"
transposase IS204/IS1001/IS1096/IS1165 family protein
PLM1_60_b1_redo_sep16_scaffold_1186_20
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15512..16228
DNA (717bp) protein (239aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003804F5E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV99270.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_60_b1_redo_sep16_scaffold_1186_21
unknown

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comp(16375..16641)
DNA (267bp) protein (89aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1186_22
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17256..18518
DNA (1263bp) protein (421aa)
DNA-repair protein Tax=Micromonospora sp. (strain L5) RepID=E8S5T4_MICSL
DNA-directed DNA polymerase {ECO:0000313|EMBL:EWM68501.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
DNA-repair protein
PLM1_60_b1_redo_sep16_scaffold_1186_23
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18628..18927
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LR18_ACIC1
hypothetical protein
ESAT-6-like protein {ECO:0000256|RuleBase:RU362001}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
PLM1_60_b1_redo_sep16_scaffold_1186_24
Nocardioidaceae bacterium Broad-1, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19147..20019)
DNA (873bp) protein (291aa)
FtsQ Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UY57_9ACTO
FtsQ {ECO:0000313|EMBL:EGD42042.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae.;" source="Nocardioidaceae bacterium Broad-1.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1186_25
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20448..20696)
DNA (249bp) protein (83aa)
hypothetical protein Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI00026269F5
nucleotidyl transferase
Nucleotidyl transferase {ECO:0000313|EMBL:ADU51981.1}; Flags: Precursor;; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM1_60_b1_redo_sep16_scaffold_1186_26
unknown

Not on your lists

comp(20693..21349)
DNA (657bp) protein (219aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1186_27
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21342..21887)
DNA (546bp) protein (182aa)
Uncharacterized protein Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JXA3_STREN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW94572.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
PLM1_60_b1_redo_sep16_scaffold_1186_28
Streptomyces clavuligerus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21930..23498
DNA (1569bp) protein (523aa)
Putative uncharacterized protein Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=B5GZR3_STRC2
Putative uncharacterized protein {ECO:0000313|EMBL:EDY51809.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 /; NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602).;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1186_29
unknown

Not on your lists

23739..24098
DNA (360bp) protein (120aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1186_30
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24229..24657
DNA (429bp) protein (143aa)
hypothetical protein Tax=Streptomyces RepID=UPI000368EB09
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADD45964.1}; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
Displaying items 1-30 of 40 in total

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