ggKbase home page

PLM1_60_coex_sep16_scaffold_7284

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_coex_sep16_scaffold_7284_1
unknown

Not on your lists

3..104
DNA (102bp) protein (34aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_7284_2
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

117..713
DNA (597bp) protein (199aa)
Imidazoleglycerol-phosphate dehydratase bin=GWB2_Geobacter-like_52_12 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hisB; imidazoleglycerol-phosphate dehydratase
Tax=GWC2_Geobacteraceae_53_11_curated
PLM1_60_coex_sep16_scaffold_7284_3
GWA2_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

717..1349
DNA (633bp) protein (211aa)
Imidazole glycerol phosphate synthase subunit HisH Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G8T1_GEOUR
hisH; imidazole glycerol phosphate synthase subunit HisH
Tax=GWA2_Deltaproteobacteria_47_9_curated
PLM1_60_coex_sep16_scaffold_7284_4
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1410..2138
DNA (729bp) protein (243aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase Tax=Synechocystis sp. PCC 7509 RepID=L8L0R5_9SYNC
Tax=RBG_13_Deltaproteobacteria_43_22_curated
PLM1_60_coex_sep16_scaffold_7284_5
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

2142..2930
DNA (789bp) protein (263aa)
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM1_60_coex_sep16_scaffold_7284_6
Sulfurospirillum sp. SCADC, Sulfurospirillum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

2946..3524
DNA (579bp) protein (193aa)
hisI; histidine biosynthesis bifunctional protein HisIE (EC:3.6.1.31 3.5.4.19)
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Sulfurospirillum.;" source="Sulfurospirillum sp. SCADC.;"
Phosphoribosyl-AMP cyclohydrolase bin=GWC2_OP3-like_45_7 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
PLM1_60_coex_sep16_scaffold_7284_7
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3642..3839
DNA (198bp) protein (66aa)
30S ribosomal protein S21 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=RS21_GEOLS
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
rpsU; 30S ribosomal protein S21
PLM1_60_coex_sep16_scaffold_7284_8

Not on your lists

3850..4449
DNA (600bp) protein (200aa)
CvpA family protein Tax=Bacteroidetes RepID=F3Y223_9FLAO
Marine sediment metagenome DNA, contig: S12H4_S13645 {ECO:0000313|EMBL:GAJ08498.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
membrane protein implicated in colicin V production
PLM1_60_coex_sep16_scaffold_7284_9
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4459..5487
DNA (1029bp) protein (343aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000381D738
MutS2 family protein
PLM1_60_coex_sep16_scaffold_7284_10
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

5487..6785
DNA (1299bp) protein (433aa)
MutS2 protein; K07456 DNA mismatch repair protein MutS2 bin=bin9_gal15 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
MutS2 protein
Tax=CSP1_3_Armatimonadetes
PLM1_60_coex_sep16_scaffold_7284_11
unknown

Not on your lists

6819..7016
DNA (198bp) protein (66aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_7284_12
CG_Desulfob_01, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7009..8904
DNA (1896bp) protein (632aa)
DNA primase (EC:2.7.7.-)
DNA primase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKY9_9BACT
Tax=CG_Desulfob_01
PLM1_60_coex_sep16_scaffold_7284_13
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

8957..9715
DNA (759bp) protein (253aa)
RNA polymerase sigma factor RpoD Tax=Geobacter RepID=A5G8S3_GEOUR
RpoD family RNA polymerase sigma factor
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
PLM1_60_coex_sep16_scaffold_7284_14
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

9702..10658
DNA (957bp) protein (319aa)
RNA polymerase sigma factor RpoD Tax=Geobacter sulfurreducens RepID=D7AEN1_GEOSK
rpoD; RNA polymerase sigma-70 factor RpoD
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
PLM1_60_coex_sep16_scaffold_7284_15
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(10831..11937)
DNA (1107bp) protein (369aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC31_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58906.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Displaying 15 items

View Taxonomy