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PLM4_65_b1_redo_sep16_scaffold_10421

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_10421_1
unknown

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1..519
-----------------
DNA (519bp)
protein (173aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_10421_2
unknown

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543..1445
-----------------
DNA (903bp)
protein (301aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_10421_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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1550..2146
-----------------
DNA (597bp)
protein (199aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00036F03AA
RNA polymerase sigma factor
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_10421_4
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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2143..5103
-----------------
DNA (2961bp)
protein (987aa)
Serine/threonine protein kinase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLH0_CHLTF
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AEP13445.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_10421_5
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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5152..7350
-----------------
DNA (2199bp)
protein (733aa)
ATP-dependent DNA helicase PcrA (EC:3.6.4.12)
ATP-dependent DNA helicase pcrA Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8E0T1_9FIRM
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM4_65_b1_redo_sep16_scaffold_10421_6
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7391..7948)
-----------------
DNA (558bp)
protein (186aa)
hypothetical protein Tax=Bacillus endophyticus RepID=UPI0002FF79B0
acetyltransferase
Acetyltransferase, including N-acetylase of ribosomal proteins {ECO:0000313|EMBL:AEN90482.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus megaterium WSH-002.;"
PLM4_65_b1_redo_sep16_scaffold_10421_7
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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8374..9177
-----------------
DNA (804bp)
protein (268aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
tRNA pseudouridine synthase A Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6P1A7_9FIRM
tRNA pseudouridine synthase A
PLM4_65_b1_redo_sep16_scaffold_10421_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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9665..10072
-----------------
DNA (408bp)
protein (136aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
UDP pyrophosphate synthase (EC:2.5.1.31)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_10421_9
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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10097..10915
-----------------
DNA (819bp)
protein (273aa)
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003624A35
PLM4_65_b1_redo_sep16_scaffold_10421_10
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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10912..11973
-----------------
DNA (1062bp)
protein (354aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADC2_THEID
Displaying 10 items

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