| name | lists | location/seqs | annotations | notes |
|---|---|---|---|---|
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PLM4_65_b1_redo_sep16_scaffold_307_1
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(3..1505)
----------------- DNA (1503bp) protein (501aa) |
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide peptidase {ECO:0000256|PIRNR:PIRNR001217}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
Peptidase S49 Tax=Rhodospirillum rubrum RepID=G2T6J9_RHORU
peptidase S49
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PLM4_65_b1_redo_sep16_scaffold_307_2
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1841..3040
----------------- DNA (1200bp) protein (400aa) |
A/G-specific adenine glycosylase (EC:3.2.2.-)
A/G-specific DNA-adenine glycosylase {ECO:0000313|EMBL:ABC81722.1}; EC=3.2.2.- {ECO:0000313|EMBL:ABC81722.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
A/G-specific DNA-adenine glycosylase Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IJ90_ANADE
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PLM4_65_b1_redo_sep16_scaffold_307_3
RBG_13_OP8X_37_8_curated, OP8X, Bacteria
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Not on your lists |
comp(3006..3992)
----------------- DNA (987bp) protein (329aa) |
Cyclic nucleotide-binding domain protein bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
cyclic nucleotide-binding domain-containing protein
Tax=RBG_13_OP8X_37_8_curated
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PLM4_65_b1_redo_sep16_scaffold_307_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria
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Not on your lists |
4016..4804
----------------- DNA (789bp) protein (263aa) |
tRNA pseudouridine synthase A Tax=Melioribacter roseus (strain P3M) RepID=I6YV68_MELRP
tRNA pseudouridine synthase A
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
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PLM4_65_b1_redo_sep16_scaffold_307_5
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(4809..5375)
----------------- DNA (567bp) protein (189aa) |
Uncharacterized protein Tax=Plesiocystis pacifica SIR-1 RepID=A6G9I1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:KIG12353.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
hypothetical protein
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PLM4_65_b1_redo_sep16_scaffold_307_6
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria
|
Not on your lists |
comp(5372..6667)
----------------- DNA (1296bp) protein (432aa) |
Aminotransferase class-III Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B098_HERA2
class III aminotransferase
Aminotransferase class-III {ECO:0000313|EMBL:ABX05207.1}; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
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PLM4_65_b1_redo_sep16_scaffold_307_7
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria
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Not on your lists |
comp(6668..7261)
----------------- DNA (594bp) protein (198aa) |
Recombination protein RecR Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=RECR_HELMI
recR; recombination protein RecR
Tax=RBG_16_Chloroflexi_64_32_curated
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PLM4_65_b1_redo_sep16_scaffold_307_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria
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Not on your lists |
comp(7284..7577)
----------------- DNA (294bp) protein (98aa) |
hypothetical protein; K09747 hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
conserved hypothetical protein TIGR00103
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
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PLM4_65_b1_redo_sep16_scaffold_307_9
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7574..9442)
----------------- DNA (1869bp) protein (623aa) |
DNA polymerase III subunits gamma and tau {ECO:0000313|EMBL:KIH77516.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KIH77516.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
DNA polymerase III, subunits gamma and tau Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LM15_SYNFM
DNA polymerase III subunits gamma and tau
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PLM4_65_b1_redo_sep16_scaffold_307_10
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria
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Not on your lists |
9570..10013
----------------- DNA (444bp) protein (148aa) |
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Cytosine/adenosine deaminase Tax=Brevibacillus RepID=J2IGP4_9BACL
tRNA specific adenosine deaminase
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PLM4_65_b1_redo_sep16_scaffold_307_trna_1
unknown
|
Not on your lists |
10142..10228
----------------- DNA (87bp) |
transferRNA Ser
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PLM4_65_b1_redo_sep16_scaffold_307_trna_2
unknown
|
Not on your lists |
10249..10335
----------------- DNA (87bp) |
transferRNA Ser
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PLM4_65_b1_redo_sep16_scaffold_307_11
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria
|
Not on your lists |
10641..11051
----------------- DNA (411bp) protein (137aa) |
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
Ribonuclease P protein component Tax=uncultured Acidobacteria bacterium RepID=H5SCK3_9BACT
rnpA; ribonuclease P protein component
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PLM4_65_b1_redo_sep16_scaffold_307_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria
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Not on your lists |
11057..11269
----------------- DNA (213bp) protein (71aa) |
hypothetical protein Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI00036956FA
hypothetical protein
Putative membrane protein insertion efficiency factor {ECO:0000255|HAMAP-Rule:MF_00386}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
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PLM4_65_b1_redo_sep16_scaffold_307_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria
|
Not on your lists |
11291..13066
----------------- DNA (1776bp) protein (592aa) |
Membrane protein insertase YidC Tax=Geobacter sp. (strain M21) RepID=YIDC_GEOSM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
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PLM4_65_b1_redo_sep16_scaffold_307_14
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria
|
Not on your lists |
13063..13902
----------------- DNA (840bp) protein (280aa) |
Single-stranded nucleic acid binding R3H domain protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C668_SPHTD
single-stranded nucleic acid binding R3H domain-containing protein
Single-stranded nucleic acid binding R3H domain protein {ECO:0000313|EMBL:ACZ37606.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
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PLM4_65_b1_redo_sep16_scaffold_307_15
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
14029..14733
----------------- DNA (705bp) protein (235aa) |
16S rRNA methyltransferase (EC:2.1.1.170)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfocapsa.;" source="Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1).;"
Ribosomal RNA small subunit methyltransferase G Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1NKE6_DESSD
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PLM4_65_b1_redo_sep16_scaffold_307_16
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
14730..15488
----------------- DNA (759bp) protein (253aa) |
Cobyrinic acid a,c-diamide synthase Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADH6_THEID
cobyrinic acid a,c-diamide synthase
Tax=BJP_IG2102_Syntrophobacterales_60_12
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PLM4_65_b1_redo_sep16_scaffold_307_17
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria
|
Not on your lists |
15485..16333
----------------- DNA (849bp) protein (283aa) |
Chromosome segregation DNA-binding protein Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S1A5_THEOJ
Uncharacterized protein {ECO:0000313|EMBL:KDA54892.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
chromosome segregation DNA-binding protein
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PLM4_65_b1_redo_sep16_scaffold_307_18
Lawsonia intracellularis, Lawsonia, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
16330..16764
----------------- DNA (435bp) protein (145aa) |
membrane protein Tax=Desulfovibrio desulfuricans RepID=UPI00036F04A7
cell shape determination protein CcmA
Integral membrane protein CcmA involved in cell shape determination {ECO:0000313|EMBL:CAJ54453.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Lawsonia.;" source="Lawsonia intracellularis (strain PHE/MN1-00).;"
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PLM4_65_b1_redo_sep16_scaffold_307_19
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria
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Not on your lists |
comp(16784..18544)
----------------- DNA (1761bp) protein (587aa) |
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00035DABD3
type I phosphodiesterase/nucleotide pyrophosphatase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
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PLM4_65_b1_redo_sep16_scaffold_307_20
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria
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Not on your lists |
18600..19421
----------------- DNA (822bp) protein (274aa) |
Uncharacterized protein {ECO:0000313|EMBL:KDA53262.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
oxidoreductase FAD/NAD(P)-binding domain-containing protein; K02823 dihydroorotate dehydrogenase electron transfer subunit bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
dihydroorotate dehydrogenase
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PLM4_65_b1_redo_sep16_scaffold_307_21
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
19415..20401
----------------- DNA (987bp) protein (329aa) |
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase Tax=uncultured bacterium RepID=K1ZT92_9BACT
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
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PLM4_65_b1_redo_sep16_scaffold_307_22
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria
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Not on your lists |
20398..21189
----------------- DNA (792bp) protein (264aa) |
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000255|HAMAP-Rule:MF_01200}; EC=4.1.1.23 {ECO:0000255|HAMAP-Rule:MF_01200};; OMP decarboxylase {ECO:0000255|HAMAP-Rule:MF_01200}; Short=OMPDCase {ECO:0000255|HAMAP-Rule:MF_01200};; Short=OMPdecase {ECO:0000255|HAMAP-Rule:MF_01200};; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00036E6DB1
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PLM4_65_b1_redo_sep16_scaffold_307_23
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(21193..21900)
----------------- DNA (708bp) protein (236aa) |
hypothetical protein Tax=beta proteobacterium L13 RepID=UPI000366227C
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
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PLM4_65_b1_redo_sep16_scaffold_307_24
unknown
|
Not on your lists |
comp(21979..22347)
----------------- DNA (369bp) protein (123aa) |
This feature has no annotations |
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PLM4_65_b1_redo_sep16_scaffold_307_25
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(22381..22923)
----------------- DNA (543bp) protein (181aa) |
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
Signal peptidase I Tax=delta proteobacterium NaphS2 RepID=D8FDY8_9DELT
signal peptidase I
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PLM4_65_b1_redo_sep16_scaffold_307_26
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria
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Not on your lists |
comp(22893..23597)
----------------- DNA (705bp) protein (235aa) |
lepB; LepB protein (EC:3.4.21.89)
LepB Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QJ56_DESAH
Tax=RBG_13_Acidobacteria_68_16_curated
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PLM4_65_b1_redo_sep16_scaffold_307_27
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria
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Not on your lists |
23998..24354
----------------- DNA (357bp) protein (119aa) |
Uncharacterized protein {ECO:0000313|EMBL:KDA54857.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
competence protein ComEA helix-hairpin-helix repeat protein; K02237 competence protein ComEA bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
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PLM4_65_b1_redo_sep16_scaffold_307_28
R_Acidobacteria_67_21, Acidobacteria, Bacteria
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Not on your lists |
24385..24981
----------------- DNA (597bp) protein (199aa) |
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
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