ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_1949

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1949_1
unknown

Not on your lists

comp(1..510)
-----------------
DNA (510bp)
protein (170aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1949_2
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(526..3111)
-----------------
DNA (2586bp)
protein (862aa)
putative serine/threonine protein kinase (EC:2.7.11.1)
Putative serine/threonine protein kinase {ECO:0000313|EMBL:BAH37112.1}; EC=2.7.11.1 {ECO:0000313|EMBL:BAH37112.1};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Putative serine/threonine protein kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3N5_GEMAT
PLM4_65_b1_redo_sep16_scaffold_1949_3
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3108..3746)
-----------------
DNA (639bp)
protein (213aa)
Uncharacterized protein Tax=Blastopirellula marina DSM 3645 RepID=A4A2T9_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EAQ76915.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM4_65_b1_redo_sep16_scaffold_1949_4

Not on your lists

comp(3769..4227)
-----------------
DNA (459bp)
protein (153aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_517.;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VVM8_9BACT
deoxyuridine 5'triphosphate nucleotidohydrolase
PLM4_65_b1_redo_sep16_scaffold_1949_5

Not on your lists

comp(4231..5001)
-----------------
DNA (771bp)
protein (257aa)
Uncharacterized protein Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VZI6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGC71580.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_517.;"
secretion/fimbrial assembly protein
PLM4_65_b1_redo_sep16_scaffold_1949_6

Not on your lists

comp(4976..5461)
-----------------
DNA (486bp)
protein (162aa)
Putative secretion system X protein GspG-like 2 Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VW54_9BACT
Putative secretion system X protein GspG-like 2 {ECO:0000313|EMBL:AGC71581.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_517.;"
type II secretion system protein G
PLM4_65_b1_redo_sep16_scaffold_1949_7

Not on your lists

comp(5455..5910)
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VRG4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGC71582.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_517.;"
general secretion pathway protein G
PLM4_65_b1_redo_sep16_scaffold_1949_8

Not on your lists

comp(5907..8426)
-----------------
DNA (2520bp)
protein (840aa)
Type II and III secretion system protein Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VWY2_9BACT
Type II and III secretion system protein {ECO:0000313|EMBL:AGC71583.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_517.;"
type II secretory pathway, component PulD
PLM4_65_b1_redo_sep16_scaffold_1949_9

Not on your lists

comp(8446..9060)
-----------------
DNA (615bp)
protein (205aa)
Uncharacterized protein Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VVN3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGC71584.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_517.;"
PLM4_65_b1_redo_sep16_scaffold_1949_10
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(9057..9662)
-----------------
DNA (606bp)
protein (202aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54506.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1949_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(9659..10732)
-----------------
DNA (1074bp)
protein (358aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAY7_CONWI
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB51300.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM4_65_b1_redo_sep16_scaffold_1949_12
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(10735..11682)
-----------------
DNA (948bp)
protein (316aa)
Putative uncharacterized protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F522_ACIC5
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1949_13
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(11711..13357)
-----------------
DNA (1647bp)
protein (549aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II secretion system protein E
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1949_14
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(13354..14571)
-----------------
DNA (1218bp)
protein (406aa)
Type II secretion system inner membrane protein PulF Tax=Geobacter metallireducens RepID=Q39UI0_GEOMG
pulF; type II secretion system inner membrane protein PulF
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1949_15
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(14575..15423)
-----------------
DNA (849bp)
protein (283aa)
putative general secretion pathway protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1949_16
unknown

Not on your lists

comp(15416..15967)
-----------------
DNA (552bp)
protein (184aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1949_17
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(15964..16608)
-----------------
DNA (645bp)
protein (215aa)
RNA polymerase sigma-70 factor, ECF subfamily Tax=uncultured prokaryote RepID=H5SKU9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KDA54499.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
RNA polymerase sigma factor
PLM4_65_b1_redo_sep16_scaffold_1949_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

16723..18057
-----------------
DNA (1335bp)
protein (445aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003733B11
3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1949_19
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18060..19115
-----------------
DNA (1056bp)
protein (352aa)
Tetraacyldisaccharide 4'-kinase Tax=Pelobacter propionicus (strain DSM 2379) RepID=LPXK_PELPD
tetraacyldisaccharide 4'-kinase
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_b1_redo_sep16_scaffold_1949_20
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

19112..19990
-----------------
DNA (879bp)
protein (293aa)
lauroyl/myristoyl acyltransferase (EC:2.3.1.-); K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Lauroyl/myristoyl acyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM4_65_b1_redo_sep16_scaffold_1949_21
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

19987..21024
-----------------
DNA (1038bp)
protein (346aa)
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-) bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_1949_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21028..21369)
-----------------
DNA (342bp)
protein (114aa)
Septum formation initiator family protein bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_1949_23
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21366..22652)
-----------------
DNA (1287bp)
protein (429aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
phosphopyruvate hydratase (EC:4.2.1.11)
enolase Tax=Nonomuraea coxensis RepID=UPI00036F090D
Displaying 23 items

View Taxonomy