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PLM4_65_b1_redo_sep16_scaffold_3149

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3149_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(55..489)
DNA (435bp) protein (145aa)
PilZ domain-containing protein {ECO:0000313|EMBL:CDM64511.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_3149_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(719..1507)
DNA (789bp) protein (263aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDW0_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:CDM64512.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3149_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(1626..4196)
DNA (2571bp) protein (857aa)
Oligopeptide transporter, OPT family Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B2A0C6_OPITP bin=16ft_combo_ws3_JS1 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Putative oligopeptide transporter, OPT family {ECO:0000313|EMBL:CDM64513.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
OPT family oligopeptide transporter
PLM4_65_b1_redo_sep16_scaffold_3149_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

4583..6979
DNA (2397bp) protein (799aa)
Peptidase M14 carboxypeptidase A Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X6R6_ACISM
peptidase M14 carboxypeptidase A
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_3149_5
unknown

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7020..7235
DNA (216bp) protein (72aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3149_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(7143..8879)
DNA (1737bp) protein (579aa)
Putative unusual protein kinase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIU1_CHLTF
Predicted unusual protein kinase {ECO:0000313|EMBL:CDM64515.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
protein kinase
PLM4_65_b1_redo_sep16_scaffold_3149_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(8949..9941)
DNA (993bp) protein (331aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2)
Riboflavin kinase/FMN adenylyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE59_CHLTF
PLM4_65_b1_redo_sep16_scaffold_3149_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10106..10873)
DNA (768bp) protein (256aa)
Metal-dependent hydrolases of the beta-lactamase superfamily I Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI01_CHLTF
Metal-dependent hydrolase, beta-lactamase superfamily I {ECO:0000313|EMBL:CDM64517.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
beta-lactamase superfamily metal-dependent hydrolase
PLM4_65_b1_redo_sep16_scaffold_3149_9
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11014..11616)
DNA (603bp) protein (201aa)
Putative uncharacterized protein Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F6C2_ACIC5
hypothetical protein
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
PLM4_65_b1_redo_sep16_scaffold_3149_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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11898..12098
DNA (201bp) protein (67aa)
MazG family protein {ECO:0000313|EMBL:CDM64519.1}; EC=3.6.1.8 {ECO:0000313|EMBL:CDM64519.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
MazG family protein Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T4M2_THEA1
MazG family protein
PLM4_65_b1_redo_sep16_scaffold_3149_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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12095..12655
DNA (561bp) protein (187aa)
MazG family protein {ECO:0000313|EMBL:CDM64519.1}; EC=3.6.1.8 {ECO:0000313|EMBL:CDM64519.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Uncharacterized protein Tax=Paenibacillus popilliae ATCC 14706 RepID=M9LA56_PAEPP
mazg family protein
PLM4_65_b1_redo_sep16_scaffold_3149_12
RBG_13_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(12754..13200)
DNA (447bp) protein (149aa)
Uncharacterized protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UAC9_MYXSD
hypothetical protein
Tax=RBG_13_Ignavibacteria_36_8_curated
PLM4_65_b1_redo_sep16_scaffold_3149_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13451..14875)
DNA (1425bp) protein (475aa)
Predicted Zn-dependent protease {ECO:0000313|EMBL:CDM65758.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
peptidase M48, Ste24p bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase M48, Ste24p
PLM4_65_b1_redo_sep16_scaffold_3149_14

Not on your lists

comp(15258..15935)
DNA (678bp) protein (226aa)
Putative uncharacterized protein Tax=uncultured organism MedDCM-OCT-S04-C138 RepID=D6PJW5_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD96016.1}; species="unclassified sequences; environmental samples.;" source="uncultured organism MedDCM-OCT-S04-C138.;"
PLM4_65_b1_redo_sep16_scaffold_3149_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(15975..16391)
DNA (417bp) protein (139aa)
Putative metal-dependent protease of the PAD1/JAB1 superfamily Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6NYE1_9FIRM
Predicted metal-dependent protease of the PAD1/JAB1 superfamily {ECO:0000313|EMBL:CDM65760.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Mov34/MPN/PAD-1 family protein
PLM4_65_b1_redo_sep16_scaffold_3149_16
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(16494..18305)
DNA (1812bp) protein (604aa)
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:CDM65761.1}; EC=6.1.1.12 {ECO:0000313|EMBL:CDM65761.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKR7_CHLTF
PLM4_65_b1_redo_sep16_scaffold_3149_17
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(18495..18878)
DNA (384bp) protein (128aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Calothrix sp. PCC 7507 RepID=K9PHX0_9CYAN
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:KIE12423.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
Glyoxalase/bleomycin resistance protein/dioxygenase
PLM4_65_b1_redo_sep16_scaffold_3149_18
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18890..19261)
DNA (372bp) protein (124aa)
Putative enzyme Tax=Cesiribacter andamanensis AMV16 RepID=M7N2D9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KFE60804.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
bleomycin resistance protein
PLM4_65_b1_redo_sep16_scaffold_3149_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(19293..19907)
DNA (615bp) protein (205aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003626F52
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF43703.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM4_65_b1_redo_sep16_scaffold_3149_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(19975..21333)
DNA (1359bp) protein (453aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hisS; histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21] bin=CNBR_ACIDO species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hisS; histidyl-tRNA synthetase
PLM4_65_b1_redo_sep16_scaffold_3149_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(21459..21971)
DNA (513bp) protein (171aa)
Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase {ECO:0000313|EMBL:CDM65763.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative Transferase, hexapeptide repeat protein bin=GWC2_Deltaproteobacteria_56_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
yrdA; putative transferase
PLM4_65_b1_redo_sep16_scaffold_3149_22
unknown

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22123..22707
DNA (585bp) protein (195aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3149_23
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22829..23308)
DNA (480bp) protein (160aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|SAAS:SAAS00071038}; EC=3.6.1.23 {ECO:0000256|SAAS:SAAS00071036};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase Tax=Phaeospirillum molischianum DSM 120 RepID=H8FYC1_PHAMO
PLM4_65_b1_redo_sep16_scaffold_3149_24
Paenibacillus mucilaginosus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23280..24257)
DNA (978bp) protein (326aa)
YajO Tax=Paenibacillus mucilaginosus RepID=F8F7X7_PAEMK
NADP-dependent aryl-alcohol dehydrogenase
YajO {ECO:0000313|EMBL:AEI40881.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus mucilaginosus (strain KNP414).;"
PLM4_65_b1_redo_sep16_scaffold_3149_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24283..24816)
DNA (534bp) protein (178aa)
Deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase Tax=Cupriavidus sp. HPC(L) RepID=V2JEG9_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM4_65_b1_redo_sep16_scaffold_3149_26
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(25031..25912)
DNA (882bp) protein (294aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIY8_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:CDM66564.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3149_27
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(26054..26827)
DNA (774bp) protein (258aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66563.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_3149_28
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(26892..27605)
DNA (714bp) protein (238aa)
ABC-type Fe3+ transport system, permease component {ECO:0000313|EMBL:CDM66562.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
PLM4_65_b1_redo_sep16_scaffold_3149_29
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(27782..28360)
DNA (579bp) protein (193aa)
RNA polymerase sigma factor Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F3F9_ACIC5
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CDM66561.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
RNA polymerase sigma factor
PLM4_65_b1_redo_sep16_scaffold_3149_30
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(28608..29837)
DNA (1230bp) protein (410aa)
Mg chelatase-related protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGZ6_CHLTF
Mg chelatase-related protein {ECO:0000313|EMBL:CDM66560.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Mg chelatase-like protein
Displaying 30 items

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