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PLM4_65_b1_redo_sep16_scaffold_1417

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1417_1
unknown

Not on your lists

comp(3..170)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1417_2
Nodularia spumigena, Nodularia, Nostocales, Cyanobacteria, Bacteria

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721..2415
DNA (1695bp) protein (565aa)
Twin-arginine translocation pathway signal Tax=Nodularia spumigena CCY9414 RepID=A0ZCI9_NODSP
Uncharacterized protein {ECO:0000313|EMBL:AHJ30985.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nodularia.;" source="Nodularia spumigena CCY9414.;"
PA-phosphatase-like phosphoesterase
PLM4_65_b1_redo_sep16_scaffold_1417_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(2553..5063)
DNA (2511bp) protein (837aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ATP-dependent DNA helicase, Rep family Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029V8_SOLUE
ATP-dependent DNA helicase Rep
PLM4_65_b1_redo_sep16_scaffold_1417_4
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5175..6287
DNA (1113bp) protein (371aa)
ada; regulatory protein Ada (EC:2.1.1.63)
hypothetical protein Tax=Fischerella sp. PCC 9339 RepID=UPI0002D97FB9
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000313|EMBL:EKE71512.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
PLM4_65_b1_redo_sep16_scaffold_1417_5
unknown

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6738..7163
DNA (426bp) protein (142aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1417_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

7293..7826
DNA (534bp) protein (178aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM64663.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_1417_7
Pseudanabaena biceps, Pseudanabaena, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

8194..8784
DNA (591bp) protein (197aa)
Tetratricopeptide TPR_1 repeat-containing protein Tax=Pseudanabaena biceps PCC 7429 RepID=L8MY55_9CYAN
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:ELS30908.1}; Flags: Precursor;; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Pseudanabaena.;" source="Pseudanabaena biceps PCC 7429.;"
peptidase S41
PLM4_65_b1_redo_sep16_scaffold_1417_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(8868..10730)
DNA (1863bp) protein (621aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
glutamine amidotransferase Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035FE553
glutamine--fructose-6-phosphate transaminase
PLM4_65_b1_redo_sep16_scaffold_1417_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(10837..12252)
DNA (1416bp) protein (472aa)
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (EC:2.3.1.157)
Bifunctional protein GlmU Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHT1_CHLTF
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_1417_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12256..13290)
DNA (1035bp) protein (345aa)
Gluconeogenesis factor Tax=mine drainage metagenome RepID=E6QIY4_9ZZZZ
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1417_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13419..14306)
DNA (888bp) protein (296aa)
TPR repeat {ECO:0000313|EMBL:CDM64475.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
histone H1-like protein HC2
PLM4_65_b1_redo_sep16_scaffold_1417_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

14665..15138
DNA (474bp) protein (158aa)
Roadblock/LC7 domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI79_CHLTF
Uncharacterized protein {ECO:0000313|EMBL:CDM64474.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
dynein regulation protein LC7
PLM4_65_b1_redo_sep16_scaffold_1417_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

15162..15746
DNA (585bp) protein (195aa)
Putative GTPase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI80_CHLTF
Predicted GTPase {ECO:0000313|EMBL:CDM64473.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative GTPase
PLM4_65_b1_redo_sep16_scaffold_1417_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(15850..16398)
DNA (549bp) protein (183aa)
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:CDM64472.1}; EC=2.3.1.128 {ECO:0000313|EMBL:CDM64472.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
acetyltransferase (EC:2.3.1.128)
Acetyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJC7_CHLTF
PLM4_65_b1_redo_sep16_scaffold_1417_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(16463..17512)
DNA (1050bp) protein (350aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
hypothetical protein Tax=WS1 bacterium JGI 0000059-K21 RepID=UPI0003665264
PLM4_65_b1_redo_sep16_scaffold_1417_16
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(17514..18446)
DNA (933bp) protein (311aa)
Ribonuclease BN bin=GWB2_Chloroflexi_49_20 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
ribonuclease
Tax=GWC2_Chloroflexi_49_37_curated
PLM4_65_b1_redo_sep16_scaffold_1417_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(18510..19511)
DNA (1002bp) protein (334aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Holliday junction ATP-dependent DNA helicase RuvB Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE51_CHLTF
Holliday junction DNA helicase subunit RuvB
PLM4_65_b1_redo_sep16_scaffold_1417_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(19636..20262)
DNA (627bp) protein (209aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Holliday junction ATP-dependent DNA helicase RuvA Tax=uncultured bacterium 293 RepID=E3T626_9BACT
ruvA; Holliday junction DNA helicase RuvA
PLM4_65_b1_redo_sep16_scaffold_1417_19
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

20512..21219
DNA (708bp) protein (236aa)
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rex; redox-sensing transcriptional repressor rex bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rex; redox-sensing transcriptional repressor rex
PLM4_65_b1_redo_sep16_scaffold_1417_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

21234..22070
DNA (837bp) protein (279aa)
Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase {ECO:0000313|EMBL:CDM64466.1}; EC=4.1.2.17 {ECO:0000313|EMBL:CDM64466.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
class II aldolase/adducin family protein bin=CNBR_ACIDO species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
class II aldolase/adducin family protein
PLM4_65_b1_redo_sep16_scaffold_1417_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

22172..22453
DNA (282bp) protein (94aa)
Carbon dioxide concentrating mechanism/carboxysome shell protein {ECO:0000313|EMBL:CDM67065.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
microcompartments protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
microcompartments protein
PLM4_65_b1_redo_sep16_scaffold_1417_22
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

22455..22730
DNA (276bp) protein (92aa)
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02C82_SOLUE
Carbon dioxide concentrating mechanism/carboxysome shell protein {ECO:0000313|EMBL:CDM67066.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ethanolamine utilization protein EutN/carboxysome structural protein Ccml
PLM4_65_b1_redo_sep16_scaffold_1417_23
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

22820..23104
DNA (285bp) protein (95aa)
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02C81_SOLUE
Carbon dioxide concentrating mechanism/carboxysome shell protein {ECO:0000313|EMBL:CDM67067.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ethanolamine utilization protein EutN/carboxysome structural protein Ccml
PLM4_65_b1_redo_sep16_scaffold_1417_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

23101..23382
DNA (282bp) protein (94aa)
Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02C80_SOLUE
Carbon dioxide concentrating mechanism/carboxysome shell protein {ECO:0000313|EMBL:CDM67068.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ethanolamine utilization protein EutN/carboxysome structural protein Ccml
PLM4_65_b1_redo_sep16_scaffold_1417_25
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

23490..23984
DNA (495bp) protein (165aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM67069.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_1417_26
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(24426..26288)
DNA (1863bp) protein (621aa)
Uncharacterized protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DR55_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA31485.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_65_b1_redo_sep16_scaffold_1417_27
unknown

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26354..26719
DNA (366bp) protein (122aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1417_28
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(26940..27578)
DNA (639bp) protein (213aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM67070.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
LemA family protein; K03744 LemA protein bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1417_29

Not on your lists

comp(27575..28354)
DNA (780bp) protein (260aa)
Uncharacterized protein {ECO:0000313|EMBL:AIA13011.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative uncharacterized protein bin=GWB2_Elusimicrobia_63_16 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWB2_Elusimicrobia_63_16 organism_group=Elusimicrobia
hypothetical protein
Displaying 29 items

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