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PLM4_65_b1_redo_sep16_scaffold_6462

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_6462_1
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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comp(559..2427)
DNA (1869bp) protein (623aa)
carbon starvation protein CstA; K06200 carbon starvation protein bin=bin1_lowGC species=Desulfotomaculum nigrificans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
cstA-1; carbon starvation protein CstA
Tax=CSP1_2_Dadabacteria
PLM4_65_b1_redo_sep16_scaffold_6462_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(2507..4243)
DNA (1737bp) protein (579aa)
Amino acid permease-associated region Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QYE9_ISOPI
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) {ECO:0000313|EMBL:CDM66763.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
amino acid permease
PLM4_65_b1_redo_sep16_scaffold_6462_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4678..5637
DNA (960bp) protein (320aa)
Universal stress protein UspA-like nucleotide-binding protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEV6_CHLTF
Universal stress protein UspA-like protein {ECO:0000313|EMBL:CDM66762.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Universal stress protein UspA-like nucleotide-binding protein
PLM4_65_b1_redo_sep16_scaffold_6462_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(5799..6620)
DNA (822bp) protein (274aa)
Lytic transglycosylase, catalytic Tax=Psychrobacter sp. (strain PRwf-1) RepID=A5WGM0_PSYWF
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:CDM66843.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
lytic transglycosylase subunit
PLM4_65_b1_redo_sep16_scaffold_6462_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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7126..7479
DNA (354bp) protein (118aa)
Putative peptidoglycan binding domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI06_CHLTF
Putative peptidoglycan binding protein {ECO:0000313|EMBL:CDM66998.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_6462_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(7666..10389)
DNA (2724bp) protein (908aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase Tax=uncultured Acidobacteria bacterium RepID=H5SBS2_9BACT
PLM4_65_b1_redo_sep16_scaffold_6462_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(10782..11021)
DNA (240bp) protein (80aa)
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_6462_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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11550..12305
DNA (756bp) protein (252aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
tRNA pseudouridine synthase B Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3EAF0_GEOLS
tRNA pseudouridine synthase B
Displaying 8 items

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