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PLM4_65_b1_redo_sep16_scaffold_245

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_245_1
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1182
DNA (1182bp) protein (394aa)
Protein TolA Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RR69_ALLVD
protein TolA
Protein TolA {ECO:0000313|EMBL:ADC61897.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium.;" source="Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 /; NCIMB 10441 / D) (Chromatium vinosum).;"
PLM4_65_b1_redo_sep16_scaffold_245_2

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comp(1198..3573)
DNA (2376bp) protein (792aa)
hypothetical protein Tax=Uliginosibacterium gangwonense RepID=UPI0003744D97
Glycosyl hydrolase family 3 N terminal domain {ECO:0000313|EMBL:AGU11176.1}; species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
BglX
PLM4_65_b1_redo_sep16_scaffold_245_3
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

3723..5621
DNA (1899bp) protein (633aa)
Uncharacterized protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZN82_OPITP
hypothetical protein
Tax=RBG_13_Planctomycetes_62_9_curated
PLM4_65_b1_redo_sep16_scaffold_245_4
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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5739..7184
DNA (1446bp) protein (482aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024A7_SOLUE
sugar (glycoside-Pentoside-hexuronide) transporter
Sugar (Glycoside-Pentoside-Hexuronide) transporter {ECO:0000313|EMBL:ABJ83669.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_245_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

7216..8181
DNA (966bp) protein (322aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QI5_SOLUE
D-isomer specific 2-hydroxyacid dehydrogenase
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding {ECO:0000313|EMBL:ABJ88085.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_245_6
RBG_16_NC10_65_8_curated, NC10, Bacteria

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comp(8281..8805)
DNA (525bp) protein (175aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027H9_SOLUE
hypothetical protein
Tax=RBG_16_NC10_65_8_curated
PLM4_65_b1_redo_sep16_scaffold_245_7
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

8962..10131
DNA (1170bp) protein (390aa)
xylA; xylose isomerase (EC:5.3.1.5)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
Xylose isomerase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N0Z5_ANATU
PLM4_65_b1_redo_sep16_scaffold_245_8
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

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10135..11631
DNA (1497bp) protein (499aa)
xylB; xylulose kinase (EC:2.7.1.17)
Xylulose kinase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZG9_ANATU
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM4_65_b1_redo_sep16_scaffold_245_9
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11638..12162)
DNA (525bp) protein (175aa)
Uncharacterized protein Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WH06_DESOD
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDG81467.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
PLM4_65_b1_redo_sep16_scaffold_245_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(12636..13541)
DNA (906bp) protein (302aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_245_11
Desulfovibrio alkalitolerans, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13716..15101)
DNA (1386bp) protein (462aa)
Fis family transcriptional regulator Tax=Desulfovibrio longus RepID=UPI0003B5499F
atoC; acetoacetate metabolism regulatory protein
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:EPR31510.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio alkalitolerans DSM 16529.;"
PLM4_65_b1_redo_sep16_scaffold_245_12
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15098..16741)
DNA (1644bp) protein (548aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
Integral membrane sensor signal transduction histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio vulgaris genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
atoS6; sensor histidine kinase
PLM4_65_b1_redo_sep16_scaffold_245_13
unknown

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comp(16729..17637)
DNA (909bp) protein (303aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_245_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(17661..18671)
DNA (1011bp) protein (337aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZY79_OPITP
Predicted amidohydrolase {ECO:0000313|EMBL:CDM64309.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
PLM4_65_b1_redo_sep16_scaffold_245_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(18658..22023)
DNA (3366bp) protein (1122aa)
TPR repeat protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IR17_KORVE
Uncharacterized protein {ECO:0000313|EMBL:CDM64308.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_245_16
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(22067..23017)
DNA (951bp) protein (317aa)
Transcriptional regulator, LysR family Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WWN9_KYRT2
LysR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_245_17
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23179..23610
DNA (432bp) protein (144aa)
hypothetical protein Tax=Streptomyces sp. SA3_actG RepID=UPI0001FFFD1F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EWM66703.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
PLM4_65_b1_redo_sep16_scaffold_245_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(23614..25848)
DNA (2235bp) protein (745aa)
TonB dependent receptor Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U1K2_MYXSD
TonB dependent receptor
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_245_19
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(25975..27555)
DNA (1581bp) protein (527aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
4-alpha-glucanotransferase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMF5_ROSCS
PLM4_65_b1_redo_sep16_scaffold_245_20
unknown

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comp(27552..28043)
DNA (492bp) protein (164aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_245_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(28048..28281)
DNA (234bp) protein (78aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003760B30
zinc finger CDGSH-type domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_245_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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28346..29320
DNA (975bp) protein (325aa)
glycine cleavage system t protein (EC:2.1.2.10)
Aminomethyltransferase, putative bin=GWC2_Methylomirabilis_70_16 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_245_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

29317..29856
DNA (540bp) protein (180aa)
ATP/cobalamin adenosyltransferase bin=CNBR_ACIDO species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP/cobalamin adenosyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_245_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(29865..31472)
DNA (1608bp) protein (536aa)
serine/threonin protein kinase bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonine protein kinase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_245_25
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31521..32198
DNA (678bp) protein (226aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 Tax=Geobacter sp. (strain M18) RepID=E8WHU8_GEOS8
HAD family hydrolase
Fructose-1-phosphate phosphatase YqaB {ECO:0000313|EMBL:GAM10826.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
PLM4_65_b1_redo_sep16_scaffold_245_26
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

32204..33043
DNA (840bp) protein (280aa)
hypothetical protein Tax=Fervidibacteria bacterium JGI 0000001-G10 RepID=UPI000369BA8F
pteridine reductase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
PLM4_65_b1_redo_sep16_scaffold_245_27
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(33073..34200)
DNA (1128bp) protein (376aa)
N-acetylglucosamine 6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01UZ6_SOLUE
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM4_65_b1_redo_sep16_scaffold_245_28
unknown

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comp(34235..36415)
DNA (2181bp) protein (727aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_245_29
BJP_IG2069_Syntrophobacterales_47_18, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36476..37165
DNA (690bp) protein (230aa)
Hypothetical cytosolic protein bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
cytoplasmic protein
Tax=BJP_IG2069_Syntrophobacterales_47_18
PLM4_65_b1_redo_sep16_scaffold_245_30
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

37223..38266
DNA (1044bp) protein (348aa)
Putative lipoprotein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MQT7_CORCM
nhaA2; putative lipoprotein
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying items 1-30 of 47 in total

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