ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_4736

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4736_1
Nitrincola sp. AK23, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..462)
DNA (462bp) protein (154aa)
D-malate dehydrogenase {ECO:0000313|EMBL:EXJ10236.1}; EC=1.1.1.83 {ECO:0000313|EMBL:EXJ10236.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. AK23.;"
isocitrate/isopropylmalate dehydrogenase (EC:1.1.1.93 4.1.1.73 1.1.1.83)
tartrate dehydrogenase Tax=Fodinicurvata sediminis RepID=UPI0003B42DD8
PLM4_65_b1_redo_sep16_scaffold_4736_2
Eggerthella sp. YY7918, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

538..2031
DNA (1494bp) protein (498aa)
Dicarboxylate transporter Tax=Eggerthella sp. (strain YY7918) RepID=F7V0G0_EEGSY
CitT; dicarboxylate transporter
Dicarboxylate transporter {ECO:0000313|EMBL:BAK44253.1}; species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella sp. (strain YY7918).;"
PLM4_65_b1_redo_sep16_scaffold_4736_3
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2038..3582)
DNA (1545bp) protein (515aa)
Uncharacterized protein Tax=Blastopirellula marina DSM 3645 RepID=A3ZPG7_9PLAN
Tax=RBG_16_Planctomycetes_64_12_curated
PLM4_65_b1_redo_sep16_scaffold_4736_4
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3654..4667
DNA (1014bp) protein (338aa)
4-hydroxyphenylpyruvate dioxygenase/hemolysin-like protein Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C1P2_DESTA
4-hydroxyphenylpyruvate dioxygenase/hemolysin-like protein
4-hydroxyphenylpyruvate dioxygenase/hemolysin-like protein {ECO:0000313|EMBL:AFM23483.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
PLM4_65_b1_redo_sep16_scaffold_4736_5
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

Not on your lists

4753..6882
DNA (2130bp) protein (710aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037F8469
beta-galactosidase
Tax=RBG_16_Aminicenantes_66_30_curated
PLM4_65_b1_redo_sep16_scaffold_4736_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6900..7463)
DNA (564bp) protein (188aa)
hypothetical protein Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI000289E2D5
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_4736_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7460..8833)
DNA (1374bp) protein (458aa)
Uncharacterized protein Tax=Plesiocystis pacifica SIR-1 RepID=A6G1P4_9DELT
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_4736_8
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8890..9312)
DNA (423bp) protein (141aa)
Rubrerythrin Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H8H6_ANADF
rubrerythrin
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_65_b1_redo_sep16_scaffold_4736_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9365..9808)
DNA (444bp) protein (148aa)
Transcriptional regulator, Fur family Tax=Geobacter sulfurreducens RepID=D7AFL9_GEOSK
Fur family transcriptional regulator
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_4736_10
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

9974..10882
DNA (909bp) protein (303aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; Flags: Precursor;; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;"
Hydroxypyruvate isomerase Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R6C9_ISOPI
xylose isomerase domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_4736_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(10879..11343)
DNA (465bp) protein (155aa)
Uncharacterized protein Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZC1_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB51886.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM4_65_b1_redo_sep16_scaffold_4736_12
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(11346..12527)
DNA (1182bp) protein (394aa)
syf:Synpcc7942_2160 alanine-glyoxylate aminotransferase (EC:2.6.1.44); K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
class V aminotransferase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM4_65_b1_redo_sep16_scaffold_4736_13
unknown

Not on your lists

comp(12635..13063)
DNA (429bp) protein (143aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4736_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

13212..14444
DNA (1233bp) protein (411aa)
beta-lactamase bin=RBG_16_Aminicenantes_63_14 species=Joostella marina genus=Joostella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
beta-lactamase
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 14 items

View Taxonomy