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PLM4_65_b1_redo_sep16_scaffold_2316

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2316_1
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(2..634)
DNA (633bp) protein (211aa)
Aminodeoxyfutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993}; Short=AFL synthase {ECO:0000256|HAMAP-Rule:MF_00993};; Short=Aminofutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993};; EC=2.5.1.120 {ECO:0000256|HAMAP-Rule:MF_00993};; Menaquinone biosynthetic enzyme MqnE {ECO:0000256|HAMAP-Rule:MF_00993}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
hypothetical protein Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B32007
FO synthase subunit 2
PLM4_65_b1_redo_sep16_scaffold_2316_2
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(727..1836)
DNA (1110bp) protein (370aa)
Lipolytic protein G-D-S-L family bin=GWF2_Geobacter_54_21 species=Nitrosopumilus maritimus genus=Nitrosopumilus taxon_order=Nitrosopumilales taxon_class=unknown phylum=Thaumarchaeota tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_b1_redo_sep16_scaffold_2316_3
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1955..5317
DNA (3363bp) protein (1121aa)
Peptidase S41 Tax=Azospirillum amazonense Y2 RepID=G1XZ10_9PROT
Peptidase S41 {ECO:0000313|EMBL:EGY01493.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2316_4
RIFOXYC2_FULL_PER-ii_58_32_curated, PER-ii, Bacteria

Not on your lists

5390..6934
DNA (1545bp) protein (515aa)
Tax=RIFOXYC2_FULL_PER-ii_58_32_curated
PLM4_65_b1_redo_sep16_scaffold_2316_5
Rhizoctonia solani, Rhizoctonia, Cantharellales, Agaricomycetes, Basidiomycota, Fungi

Not on your lists

6983..7747
DNA (765bp) protein (255aa)
Putative uncharacterized protein Tax=Branchiostoma floridae RepID=C3YWB8_BRAFL
Protein transporter SEC31 {ECO:0000313|EMBL:EUC60840.1}; species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Cantharellales; Ceratobasidiaceae; mitosporic Ceratobasidiaceae; Rhizoctonia.;" source="Rhizoctonia solani AG-3 Rhs1AP.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2316_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(7851..8456)
DNA (606bp) protein (202aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00038067F9
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_2316_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8453..9088)
DNA (636bp) protein (212aa)
Lytic transglycosylase, catalytic Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IJB3_KORVE
lytic transglycosylase, catalytic
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9098..9805)
DNA (708bp) protein (236aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(9829..10299)
DNA (471bp) protein (157aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(10356..12215)
DNA (1860bp) protein (620aa)
Type II and III secretion system protein Tax=uncultured bacterium A1Q1_fos_517 RepID=L7VWY2_9BACT
type II secretion system protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_2316_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12233..12646)
DNA (414bp) protein (138aa)
fimbrial protein pilin; K02456 general secretion pathway protein G bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
type II secretion system protein G
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12621..13091)
DNA (471bp) protein (157aa)
putative secretion protein; K02456 general secretion pathway protein G bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
general secretion pathway protein G
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(13081..13656)
DNA (576bp) protein (192aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(13653..14210)
DNA (558bp) protein (186aa)
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14211..15179)
DNA (969bp) protein (323aa)
hypothetical protein; K02662 type IV pilus assembly protein PilM bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(15176..16813)
DNA (1638bp) protein (546aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II secretion system protein E
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16810..18021)
DNA (1212bp) protein (404aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
type II secretion system protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_18

Not on your lists

comp(18349..19035)
DNA (687bp) protein (229aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000375784F
Marine sediment metagenome DNA, contig: S01H4_L00037 {ECO:0000313|EMBL:GAG54044.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
OmpR family response regulator
PLM4_65_b1_redo_sep16_scaffold_2316_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19032..20654)
DNA (1623bp) protein (541aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000376C159
OmpR family signal transduction histidine kinase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

20740..21213
DNA (474bp) protein (158aa)
SsrA-binding protein Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P9E4_DEFDS
smpB; ssrA RNA (tmRNA)-binding protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21261..22025)
DNA (765bp) protein (255aa)
3-oxoacyl-[acyl-carrier-protein] reductase Tax=Roseiflexus sp. (strain RS-1) RepID=A5V1Y0_ROSS1
short-chain dehydrogenase/reductase SDR
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_22
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22075..23484
DNA (1410bp) protein (470aa)
Uncharacterized protein Tax=Hoeflea phototrophica DFL-43 RepID=A9D305_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AKF07365.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2316_23
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(23554..24039)
DNA (486bp) protein (162aa)
DinB family protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Y08_SOLUE
DinB family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2316_24
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24148..24789)
DNA (642bp) protein (214aa)
Alkylated DNA repair protein AlkB Tax=Myxococcus xanthus RepID=Q1CZU9_MYXXD
alkB; alkylated DNA repair protein AlkB
Alkylated DNA repair protein AlkB {ECO:0000313|EMBL:ABF92660.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
PLM4_65_b1_redo_sep16_scaffold_2316_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24786..25475)
DNA (690bp) protein (230aa)
Uncharacterized protein Tax=Rhodanobacter denitrificans RepID=I4WXL0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88923.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
PLM4_65_b1_redo_sep16_scaffold_2316_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(25572..28835)
DNA (3264bp) protein (1088aa)
Cation/multidrug efflux pump; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Cation/multidrug efflux pump
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_2316_27
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(28843..30048)
DNA (1206bp) protein (402aa)
RND family efflux transporter, MFP subunit Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKW5_CHLTF
RND family efflux transporter MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AEP13320.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_2316_28
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31134..31631
DNA (498bp) protein (166aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
ABC-type sugar transport system, ATPase component Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNV0_SINAD
sugar ABC transporter ATPase
PLM4_65_b1_redo_sep16_scaffold_2316_29
unknown

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31628..31729
DNA (102bp) protein (34aa)

This feature has no annotations

Displaying 29 items

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