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PLM4_65_b1_redo_sep16_scaffold_2340_13

Organism: PLM4_65_b1_sep16_Acidobacteria_71_15

near complete RP 49 / 55 MC: 1 BSCG 49 / 51 MC: 3 ASCG 13 / 38
Location: comp(11437..12879)

Top 3 Functional Annotations

Value Algorithm Source
sigma-54 (RpoN); K03092 RNA polymerase sigma-54 factor bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 59.1
  • Coverage: 482.0
  • Bit_score: 578
  • Evalue 5.40e-162
RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 45.5
  • Coverage: 486.0
  • Bit_score: 422
  • Evalue 1.10e-115
Tax=RBG_16_Acidobacteria_70_10_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 81.5
  • Coverage: 480.0
  • Bit_score: 773
  • Evalue 1.60e-220

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Taxonomy

RBG_16_Acidobacteria_70_10_curated → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 1443
TTGGCGCTGCACCAGAAGCTAGGGCTCAGCACCCGCCTGTCGCAACGGCTGATCCTCACGCCGTCGCTGCAGCAGGCGATCAAGCTGCTACCGCTCACGACGCTGGAGCTCGCCGAGGTGCTCGAGCAGGAGGTGATGGAGAACCCGCTGCTCGAGGAGGTGCCGGTCGAGGAGACCAAGACCAACGAGGAGATCGCGCAGGAGGCGCAGGCGGAGCCCCAGGCCGAGCGCGAGCGCGCCGAGGACCCGCTCAAGGACATCGAGGTCGAGCGCTTCTTCGAGGATTACTTCGACGACGGCGGCGGCGAGCGCCGGATGCGGCCGGCCGAGGTGCCCGAGGTGCCGCCGATCGAGAACACGCTCACCGAGTCGCTCGACCTGTACGACTACCTGCTGTGGCAGCTGCACATGACGGCGAGCGACGAGCTGACGCTCCTGATCTCCGAGGCGATCGTGCAGAACCTCGACGAGGACGGCCTGCTGCGCGTGTCGCTCGAGGACGTGGCGGCGATGGGGCCGTGGCCGATGGAAGCGGTCGAGAAGGCGCTCGGCCACGTGCAGGCGCTCGACCCGCCTGGCATCGCCGCGCGGACCCTGACGGAATGCCTGCGCATCCAGCTGCGGGTGCTGGGGCTCGAGAACTCGCCGGCCGACATCATGGTCCGCGACCACATCAAGCAGCTCCAGAGCCACCAGTACCCCGAGATCTCGCGCCAGATGGGGCTGTCGCCCGACGAGGTGTCGCACCACCTCGAGATCATCCGCGGGCTCTCGCCGCGCCCCGGCAACCGCTACAGCTCGAAGCGCTCGGACTACATCCTGCCCGACGTGTTCGTGGTGAAGGAAGGCGACGAGTACAAGATCCTGCTGAACGACGACGGGCTGCCCAAGCTGCGCATCAGCCCGACCTACAAGCGCATGCTCGACAACAAGGAGCCCGGCTCGGAGGAGACGCGCGCCTACGTCAAGGACAAGCTCAGGAGCGCGCTCTGGCTGCTGAAGAGCGTCGACCAGCGCCAGCGCACGATCTACAAGGTGGCGGAGTCGATCGTGCGCCACCAGCGCGCGTTCCTCGACCACGGCGTCACCCACCTGCGGCCGCTGGTGCTGCGCGACGTGGCGAGCGACATCGGCATGCACGAGTCGACCGTGTCGCGCGTGGTGGCCAACAAGTACATGCACACCCCGCGCGGCGTCTACGAGATGCGCTTCTTCTTCCACAGCGGGATCACCTCCACGATGGGCGAGGCGGTGAGCTCCGTCTCGATCAAGAACCGGATCCGCAAGATGATCGAGGAGGAGGACGCCTCGCGCCCGCTCAGCGACTCGCGCATCGCCGAGGTGCTCGGGGCGGAGGGTCTGCCGCTCGCGCGCCGCACGGTGGCGAAGTACCGCGAGGAGCTGCGCCTGCCGCCCTCCAACCTGCGCAAGACCGTGCACTAG
PROTEIN sequence
Length: 481
LALHQKLGLSTRLSQRLILTPSLQQAIKLLPLTTLELAEVLEQEVMENPLLEEVPVEETKTNEEIAQEAQAEPQAERERAEDPLKDIEVERFFEDYFDDGGGERRMRPAEVPEVPPIENTLTESLDLYDYLLWQLHMTASDELTLLISEAIVQNLDEDGLLRVSLEDVAAMGPWPMEAVEKALGHVQALDPPGIAARTLTECLRIQLRVLGLENSPADIMVRDHIKQLQSHQYPEISRQMGLSPDEVSHHLEIIRGLSPRPGNRYSSKRSDYILPDVFVVKEGDEYKILLNDDGLPKLRISPTYKRMLDNKEPGSEETRAYVKDKLRSALWLLKSVDQRQRTIYKVAESIVRHQRAFLDHGVTHLRPLVLRDVASDIGMHESTVSRVVANKYMHTPRGVYEMRFFFHSGITSTMGEAVSSVSIKNRIRKMIEEEDASRPLSDSRIAEVLGAEGLPLARRTVAKYREELRLPPSNLRKTVH*