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PLM4_65_b1_redo_sep16_scaffold_2340

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2340_1
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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1..420
DNA (420bp) protein (140aa)
Peptidoglycan-associated lipoprotein Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QMA9_CHLP8
peptidoglycan-associated lipoprotein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_65_b1_redo_sep16_scaffold_2340_2
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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538..1359
DNA (822bp) protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54241.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
TPR-domain containing protein
PLM4_65_b1_redo_sep16_scaffold_2340_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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1379..1852
DNA (474bp) protein (158aa)
Single-stranded DNA-binding protein Tax=Rhizobium sp. (strain NGR234) RepID=C3MD07_RHISN
single-stranded DNA-binding protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_2340_4
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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1886..2977
DNA (1092bp) protein (364aa)
chalcone synthase (EC:2.3.1.74)
Chalcone and stilbene synthase domain protein Tax=Streptomyces RepID=E8WGK7_STRFA
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM4_65_b1_redo_sep16_scaffold_2340_5
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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2974..3648
DNA (675bp) protein (225aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036B97EC
Methyltransferase type 11 {ECO:0000313|EMBL:CCQ91131.1}; species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
methyltransferase type 11
PLM4_65_b1_redo_sep16_scaffold_2340_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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3645..4850
DNA (1206bp) protein (402aa)
monooxygenase FAD-binding protein
Monooxygenase FAD-binding protein {ECO:0000313|EMBL:AHG91718.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Electron transfer oxidoreductase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
PLM4_65_b1_redo_sep16_scaffold_2340_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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4873..7002
DNA (2130bp) protein (710aa)
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type subunit beta (EC:1.2.4.4)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHN3_CHLTF
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2340_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(7065..8798)
DNA (1734bp) protein (578aa)
Phosphoenolpyruvate-protein phosphotransferase bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
phosphoenolpyruvate-protein phosphotransferase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2340_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(8795..9064)
DNA (270bp) protein (90aa)
phosphocarrier protein HPr Tax=Neisseria lactamica RepID=UPI0002F9BDF1
phosphotransferase system HPr family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2340_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(9061..9459)
DNA (399bp) protein (133aa)
PTS system transporter subunit IIA (EC:2.7.1.69); K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69] bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
PTS system transporter subunit IIA (EC:2.7.1.69)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2340_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(9464..10345)
DNA (882bp) protein (294aa)
putative P-loop-containing kinase; K06958 UPF0042 nucleotide-binding protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2340_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(10342..11373)
DNA (1032bp) protein (344aa)
HPr kinase/phosphorylase Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AJW9_GEOSK
hprK; HPr(Ser) kinase/phosphatase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2340_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11437..12879)
DNA (1443bp) protein (481aa)
sigma-54 (RpoN); K03092 RNA polymerase sigma-54 factor bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RNA polymerase sigma-54 factor
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2340_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12908..13684)
DNA (777bp) protein (259aa)
ABC transporter ATPase (EC:3.6.3.-)
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2340_15
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(13681..15729)
DNA (2049bp) protein (683aa)
Uncharacterized protein conserved in bacteria Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIS1_CHLTF
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:AEP12289.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_2340_16
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(15898..16863)
DNA (966bp) protein (322aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha Tax=Geobacter sulfurreducens RepID=ACCA_GEOSL
accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha
PLM4_65_b1_redo_sep16_scaffold_2340_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16895..20461)
DNA (3567bp) protein (1189aa)
DNA polymerase III, alpha subunit; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA polymerase III subunit alpha (EC:2.7.7.7)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2340_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20458..21087)
DNA (630bp) protein (210aa)
guaA; GMP synthase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
guaA; GMP synthase glutamine-hydrolyzing (EC:6.3.5.2)
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 18 items

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