ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_191

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_191_1
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3..275
DNA (273bp) protein (91aa)
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AIF83393.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_191_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

507..1610
DNA (1104bp) protein (368aa)
ino1; myo-inositol-1-phosphate synthase (EC:5.5.1.4)
Myo-inositol-1-phosphate synthase {ECO:0000313|EMBL:AFU58838.1}; EC=5.5.1.4 {ECO:0000313|EMBL:AFU58838.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Myo-inositol-1-phosphate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIH4_NITGG
PLM1_60_b1_redo_sep16_scaffold_191_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

1734..5267
DNA (3534bp) protein (1178aa)
Chromosome segregation protein SMC Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN66_NITGG
Chromosome segregation protein SMC {ECO:0000313|EMBL:AFU58839.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
chromosome segregation protein SMC
PLM1_60_b1_redo_sep16_scaffold_191_4
unknown

Not on your lists

comp(5394..5531)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_191_5
Arsenophonus nasoniae, Arsenophonus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5676..6221)
DNA (546bp) protein (182aa)
Putative uncharacterized protein Tax=Arsenophonus nasoniae RepID=D2TWI9_9ENTR
Putative uncharacterized protein {ECO:0000313|EMBL:CBA71743.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Arsenophonus.;" source="Arsenophonus nasoniae (son-killer infecting Nasonia vitripennis).;"
PLM1_60_b1_redo_sep16_scaffold_191_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

6521..7798
DNA (1278bp) protein (426aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IAA4_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU58251.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_191_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(7822..7971)
DNA (150bp) protein (50aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15302.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_191_8

Not on your lists

8346..8603
DNA (258bp) protein (86aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG8O8 RepID=B3TBB0_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKL21280.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM1_60_b1_redo_sep16_scaffold_191_9
Paramecium tetraurelia, Paramecium, Peniculida, Oligohymenophorea, Eukaryota

Not on your lists

comp(8816..9409)
DNA (594bp) protein (198aa)
Chromosome undetermined scaffold_652, whole genome shotgun sequence. (Fragment) Tax=Paramecium tetraurelia RepID=A0DVF7_PARTE
Chromosome undetermined scaffold_652, whole genome shotgun sequence {ECO:0000313|EMBL:CAK87024.1}; Flags: Fragment;; species="Eukaryota; Alveolata; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium.;" source="Paramecium tetraurelia.;"
TPR domain protein, putative component of TonB system
PLM1_60_b1_redo_sep16_scaffold_191_10
unknown

Not on your lists

comp(9409..9573)
DNA (165bp) protein (55aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_191_11
unknown

Not on your lists

comp(9858..10196)
DNA (339bp) protein (113aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_191_12

Not on your lists

comp(11017..11286)
DNA (270bp) protein (90aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI000375BDE6
Marine sediment metagenome DNA, contig: S03H2_C02680 {ECO:0000313|EMBL:GAH30426.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_191_13
unknown

Not on your lists

11614..12093
DNA (480bp) protein (160aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_191_14
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12903..13901)
DNA (999bp) protein (333aa)
hydrolase transmembrane protein bin=bin5_DeltaP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin5_DeltaP organism_group=Deltaproteobacteria
hydrolase transmembrane protein
Tax=CSP1_8_Deltaproteobacteria
PLM1_60_b1_redo_sep16_scaffold_191_15
unknown

Not on your lists

14004..14207
DNA (204bp) protein (68aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_191_trna_1
unknown

Not on your lists

comp(14019..14093)
DNA (75bp)
transferRNA Met
PLM1_60_b1_redo_sep16_scaffold_191_16
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(14204..14860)
DNA (657bp) protein (219aa)
Putative coenzyme PQQ synthesis protein c Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMQ6_NITGG
TENA/THI-4 domain protein
TENA/THI-4 domain protein {ECO:0000313|EMBL:AIC15381.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_191_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

15317..16189
DNA (873bp) protein (291aa)
Putative geranylgeranyl pyrophosphate synthase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IGX6_NITGG
gds1; geranylgeranyl pyrophosphate synthase
Putative geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:AFU58103.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_191_18
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(16218..16577)
DNA (360bp) protein (120aa)
hypothetical protein Tax=candidate division YNPFFA RepID=UPI000380515C
hypothetical protein
Tax=RBG_16_Thaumarchaeota_49_8_curated
PLM1_60_b1_redo_sep16_scaffold_191_19
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(16670..16810)
DNA (141bp) protein (47aa)
Tax=RBG_13_Planctomycetes_63_9_curated
PLM1_60_b1_redo_sep16_scaffold_191_20
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

17046..17447
DNA (402bp) protein (134aa)
glyoxalase/bleomycin resistance protein/dioxygenase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=CSP1_1_Thaumarchaeota
PLM1_60_b1_redo_sep16_scaffold_191_21
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17561..18295)
DNA (735bp) protein (245aa)
Protein phosphatase PrpC {ECO:0000313|EMBL:CCP26342.1}; EC=3.1.3.16 {ECO:0000313|EMBL:CCP26342.1};; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
Protein phosphatase PrpC Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LVM3_TEPAE
Ser/Thr phosphatase
PLM1_60_b1_redo_sep16_scaffold_191_22

Not on your lists

comp(18570..19382)
DNA (813bp) protein (271aa)
Putative terminase, large subunit Tax=Nitrososphaera phage Pro-Nvie1 RepID=F8K9M3_9VIRU
putative terminase, large subunit
Putative terminase, large subunit {ECO:0000313|EMBL:CBX88946.1}; species="Viruses; unclassified phages.;" source="Nitrososphaera phage Pro-Nvie1.;"
PLM1_60_b1_redo_sep16_scaffold_191_23
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(19517..20074)
DNA (558bp) protein (186aa)
Putative NADPH-dependent FMN reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJE9_NITGG
putative NADPH-dependent FMN reductase
Putative NADPH-dependent FMN reductase {ECO:0000313|EMBL:AIC17019.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM1_60_b1_redo_sep16_scaffold_191_24
unknown

Not on your lists

20221..21054
DNA (834bp) protein (278aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_191_25
Vibrio variabilis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21157..21846)
DNA (690bp) protein (230aa)
Alkaline phosphatase {ECO:0000313|EMBL:GAL29674.1}; EC=3.1.3.1 {ECO:0000313|EMBL:GAL29674.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio variabilis.;"
Hemolysin-type calcium-binding repeat family protein Tax=Lyngbya aestuarii BL J RepID=U7QL28_9CYAN
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_191_26
unknown

Not on your lists

22094..22429
DNA (336bp) protein (112aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_191_27
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(22575..23762)
DNA (1188bp) protein (396aa)
DUF650 and DUF651 domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKD8_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF83699.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM1_60_b1_redo_sep16_scaffold_191_28
unknown

Not on your lists

comp(23863..24159)
DNA (297bp) protein (99aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_191_29
unknown

Not on your lists

comp(24164..24976)
DNA (813bp) protein (271aa)

This feature has no annotations

Displaying items 1-30 of 57 in total

View Taxonomy