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PLM1_60_b1_redo_sep16_scaffold_6294

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_6294_1
Mycobacterium cosmeticum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..645)
DNA (645bp) protein (215aa)
Riboflavin synthase subunit alpha Tax=Rhodococcus ruber BKS 20-38 RepID=M2Y7K4_9NOCA
Riboflavin synthase, subunit alpha {ECO:0000313|EMBL:CDO11309.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium cosmeticum.;"
riboflavin synthase subunit alpha
PLM1_60_b1_redo_sep16_scaffold_6294_2
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(646..1680)
DNA (1035bp) protein (345aa)
DeoR family transcriptional regulator Tax=Micromonospora sp. CNB394 RepID=UPI0003659A61
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
riboflavin biosynthesis protein ribd
PLM1_60_b1_redo_sep16_scaffold_6294_3
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1930..3237)
DNA (1308bp) protein (436aa)
diguanylate cyclase Tax=Micromonospora sp. CNB394 RepID=UPI00035C7B98
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EXG81349.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
response regulator receiver
PLM1_60_b1_redo_sep16_scaffold_6294_4
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3234..3917)
DNA (684bp) protein (228aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase Tax=Mycobacterium vaccae ATCC 25954 RepID=K0V2Z1_MYCVA
PLM1_60_b1_redo_sep16_scaffold_6294_5
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(3979..5409)
DNA (1431bp) protein (477aa)
rRNA cytosine-C5-methyltransferase Tax=Micromonospora sp. CNB394 RepID=UPI0003824512
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR61226.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
Fmu (Sun) domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_6294_6
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(5441..6331)
DNA (891bp) protein (297aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase Tax=Micromonospora lupini str. Lupac 08 RepID=I0L1B6_9ACTO
PLM1_60_b1_redo_sep16_scaffold_6294_7
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(6364..6912)
DNA (549bp) protein (183aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
def; peptide deformylase (EC:3.5.1.88)
peptide deformylase Tax=Micromonospora sp. CNB394 RepID=UPI000373E356
PLM1_60_b1_redo_sep16_scaffold_6294_8
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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7064..7441
DNA (378bp) protein (126aa)
lysine 6-monooxygenase Tax=Amycolatopsis benzoatilytica RepID=UPI00037211B7
Lysine 6-monooxygenase {ECO:0000313|EMBL:KDN21111.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
Displaying 8 items

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