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PLM1_60_b1_redo_sep16_scaffold_701

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_701_1
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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237..1415
DNA (1179bp) protein (393aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
chorismate synthase (EC:4.2.3.5)
chorismate synthase Tax=Salinispora pacifica RepID=UPI00035EA6B6
PLM1_60_b1_redo_sep16_scaffold_701_2
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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1412..1921
DNA (510bp) protein (170aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F3J2_VERMA
PLM1_60_b1_redo_sep16_scaffold_701_3
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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1918..3126
DNA (1209bp) protein (403aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
3-dehydroquinate synthase Tax=Frankia sp. Iso899 RepID=UPI0003B4091F
aroB; 3-dehydroquinate synthase
PLM1_60_b1_redo_sep16_scaffold_701_4
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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3123..3551
DNA (429bp) protein (143aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
3-dehydroquinate dehydratase Tax=Micromonospora lupini str. Lupac 08 RepID=I0L192_9ACTO
3-dehydroquinate dehydratase
PLM1_60_b1_redo_sep16_scaffold_701_5
unknown

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3544..4020
DNA (477bp) protein (159aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_701_6
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4153..6054)
DNA (1902bp) protein (634aa)
Uncharacterized protein Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K7W3_SACES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH34471.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM1_60_b1_redo_sep16_scaffold_701_7
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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6314..6877
DNA (564bp) protein (188aa)
Elongation factor P Tax=Modestobacter marinus (strain BC501) RepID=I4EZC9_MODMB
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
efp; elongation factor P
PLM1_60_b1_redo_sep16_scaffold_701_8
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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6879..7316
DNA (438bp) protein (146aa)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000362E69D
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
NusB antitermination factor
PLM1_60_b1_redo_sep16_scaffold_701_9
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7380..7853)
DNA (474bp) protein (158aa)
Helix-turn-helix domain protein Tax=Micromonospora RepID=D9T5S2_MICAI
Putative transcriptional regulator {ECO:0000313|EMBL:EXG81330.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
helix-turn-helix domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_701_10
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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8127..8792
DNA (666bp) protein (222aa)
Uracil phosphoribosyltransferase (EC:2.4.2.9)
uracil phosphoribosyltransferase Tax=Longispora albida RepID=UPI000360209E
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
PLM1_60_b1_redo_sep16_scaffold_701_11
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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8789..9718
DNA (930bp) protein (310aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
aspartate carbamoyltransferase Tax=Actinomadura atramentaria RepID=UPI0003669746
PLM1_60_b1_redo_sep16_scaffold_701_12
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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9715..11001
DNA (1287bp) protein (429aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Dihydroorotase Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3QBE0_STANL
dihydroorotase multifunctional complex type
PLM1_60_b1_redo_sep16_scaffold_701_13
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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10998..11513
DNA (516bp) protein (172aa)
hypothetical protein Tax=Actinoalloteichus spitiensis RepID=UPI00036B5C50
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ24237.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM1_60_b1_redo_sep16_scaffold_701_14
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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11510..12610
DNA (1101bp) protein (367aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Carbamoyl-phosphate synthase small chain Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8K4Y9_STREN
pyrAA; pyrimidine-specific carbamoyl-phosphate synthetase (small subunit, glutaminase subunit)
PLM1_60_b1_redo_sep16_scaffold_701_15
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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12645..15959
DNA (3315bp) protein (1105aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Carbamoyl-phosphate synthase large chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain Tax=Saccharopolyspora erythraea RepID=A4FBG5_SACEN
PLM1_60_b1_redo_sep16_scaffold_701_16
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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15956..17113
DNA (1158bp) protein (386aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000255|HAMAP-Rule:MF_00225}; EC=1.3.5.2 {ECO:0000255|HAMAP-Rule:MF_00225};; DHOdehase {ECO:0000255|HAMAP-Rule:MF_00225}; Short=DHOD {ECO:0000255|HAMAP-Rule:MF_00225};; Short=DHODase {ECO:0000255|HAMAP-Rule:MF_00225};; Dihydroorotate oxidase {ECO:0000255|HAMAP-Rule:MF_00225}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000378C35C
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_701_17
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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17110..17955
DNA (846bp) protein (282aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
pyrF; orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000362F69D
PLM1_60_b1_redo_sep16_scaffold_701_18
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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18233..18562
DNA (330bp) protein (110aa)
integration host factor Tax=Nocardiopsis RepID=UPI0003466DE4
Uncharacterized protein {ECO:0000313|EMBL:EXG81339.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_701_19
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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18570..19154
DNA (585bp) protein (195aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase Tax=Actinomadura madurae LIID-AJ290 RepID=U2P5L4_9ACTO
PLM1_60_b1_redo_sep16_scaffold_701_20
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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19191..19454
DNA (264bp) protein (88aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
DNA-directed RNA polymerase subunit omega Tax=Actinoplanes globisporus RepID=UPI00036F2196
rpoZ; putative RNA polymerase subunit omega
PLM1_60_b1_redo_sep16_scaffold_701_21
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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19468..20673
DNA (1206bp) protein (402aa)
coaBC; Coenzyme A biosynthesis bifunctional protein CoaBC (EC:4.1.1.36)
Coenzyme A biosynthesis bifunctional protein CoaBC {ECO:0000313|EMBL:CCK31490.1}; EC=4.1.1.36 {ECO:0000313|EMBL:CCK31490.1};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
Coenzyme A biosynthesis bifunctional protein CoaBC Tax=Streptomyces davawensis JCM 4913 RepID=K4RDJ6_9ACTO
PLM1_60_b1_redo_sep16_scaffold_701_22
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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20788..21984
DNA (1197bp) protein (399aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase Tax=Sporichthya polymorpha RepID=UPI000380E883
PLM1_60_b1_redo_sep16_scaffold_701_23
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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22097..24196
DNA (2100bp) protein (700aa)
Probable primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein Tax=Actinomadura flavalba RepID=UPI000370A099
Primosomal protein N'
PLM1_60_b1_redo_sep16_scaffold_701_24
unknown

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comp(24216..25214)
DNA (999bp) protein (333aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_701_25
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(25211..25831)
DNA (621bp) protein (207aa)
Uncharacterized protein Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K8F0_SACES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH34641.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
Displaying 25 items

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