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PLM1_60_b1_redo_sep16_scaffold_1830_17

Organism: PLM1_60_b1_sep16_Acidothermus_cellulolyticus_70_16

near complete RP 52 / 55 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 3
Location: 18564..20081

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase ECF-type sigma factor Tax=Gordonia rhizosphera NBRC 16068 RepID=K6WY41_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 38.3
  • Coverage: 488.0
  • Bit_score: 270
  • Evalue 2.50e-69
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAB91479.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 38.3
  • Coverage: 488.0
  • Bit_score: 270
  • Evalue 3.60e-69
putative RNA polymerase ECF subfamily sigma factor similarity KEGG
DB: KEGG
  • Identity: 37.9
  • Coverage: 457.0
  • Bit_score: 266
  • Evalue 1.40e-68

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Taxonomy

Gordonia rhizosphera → Gordonia → Corynebacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1518
GTGCGCGCCGTGGAAGACCGCGCCATCGTGCAGGCGCTCTGCGACCATGATCGTGCCGGCCTCGCAGCCGTCTACGACAGGTACGCGCAGCGGCTCTACGACTACTGCGTCGGATTGCTCCACGACCGGCACACGGCGGCCGACGCCGTCCACGACACGTTGCTCGTCGCGGCGGACCGCGCCCAGCAGCTCCGCGACCCCGAGCGCTTCCGGGCCTGGTTATACGCGATCGCCCGGAACGAATGCCTGCGCCAGCTCCGCCAGCGCAACCGGACCGCGCCGCTGGAGAAGGCCGGCGAGGTGAAGGACGAGACCATCGACCTCGGCCGCTCGGTCCAGGCCGAGCAGGCGCGCGCGCTCGTCCGCGACGCCGCGGCCGGCCTCAACCCGCGCGAGCAGGAGGTTCTCAACCTCACCCTGCGGCACGAGCTGAGCGGCGCCGAGCTGGCGGCGGCACTCGGCGTCTCGCCCAACCACGCGCACGCCCTCACGTCGAAGGCGCGCGAGCAGCTGGAGCGGTCCGTCGGCGCGCTGCTCACCGCGCGGGCCGGTCGGGGCGAGTGCGGCGAGCTGGACACAATGCTCGCCGGCTGGGACGGCGCGTTCACGCCGTTGCTGCGCAAGCGGATCAGCCGCCACCTGGAGAAGTGCGCGGTATGCGGCGTGCGGCGGGCGCACGAGGTGCGTGCCGAGGCACTGTTCGCGGCTCTGCCGTTCGCGGTTCTCCCGATCGCGCTGCGGCGGAAGGTGCTCGACTCGGGCGCCGACCTCCAGCGTGTTTCCCATCACGGCCGGATCGCCGCGCCGTACGACCGGGGCGGTTTCCCGGTGCCGCTGGGGCAGCAGAGCAAACGGTCGAAGGCGGCGGTGTGGCTGGCCGGTGCGGCGGTGATCGCGCTGTTGCTCGGCGGCGGCGGGGTGCTGGTGGCGCTGCGACCCGGCGCGGAGGCCACCGTGGCCGAACCGCCGCCGCGCACCACGCCAGCCACCGAGGAGCCGTTCGTCACCGAATCGCCGTCGGCCGTACCGTCGCCGTCCGCGACGTCCGCCTCGCCCACGCCGTCGCCGTCGGTGTTCCGGACGCCGTCGCCGCGGGTCACGCCGCCTCGCCGGGTACCGCCGCGGGTCACTCGCCGTCCGCAGCCGCCGCCCGTTCCTCCGCCGACGACGCCGCCGAGCCCGAAGCCGTCGCCGTCGCGCTCACCCAAACCTCCCTTGCCCAAGCCCGTGGTGACGAACCCGAACTTCGCTGGCGGATGCACTGGAGCCACGGCTTCGGCTACGGTGACCGGCCCGCCGATTGCTCGGGTTTCGGTGACGTTCTGGCGCGCCAAGGTGACGACGGATACCCGGAGCGCGCCGATGTTCCCGGACGGCAGTGACTATTTCGGCAGGGTCGAGGCTGACCAGCTGTTCTTCAACGAGACGGTTGAATTCGTCATCACCGCCGTGGCGGAGAACGGTGAGAAGGGCAGTAACCGTGGTACCACGACATTCGTCTGCCGCGGTCCGGACTGA
PROTEIN sequence
Length: 506
VRAVEDRAIVQALCDHDRAGLAAVYDRYAQRLYDYCVGLLHDRHTAADAVHDTLLVAADRAQQLRDPERFRAWLYAIARNECLRQLRQRNRTAPLEKAGEVKDETIDLGRSVQAEQARALVRDAAAGLNPREQEVLNLTLRHELSGAELAAALGVSPNHAHALTSKAREQLERSVGALLTARAGRGECGELDTMLAGWDGAFTPLLRKRISRHLEKCAVCGVRRAHEVRAEALFAALPFAVLPIALRRKVLDSGADLQRVSHHGRIAAPYDRGGFPVPLGQQSKRSKAAVWLAGAAVIALLLGGGGVLVALRPGAEATVAEPPPRTTPATEEPFVTESPSAVPSPSATSASPTPSPSVFRTPSPRVTPPRRVPPRVTRRPQPPPVPPPTTPPSPKPSPSRSPKPPLPKPVVTNPNFAGGCTGATASATVTGPPIARVSVTFWRAKVTTDTRSAPMFPDGSDYFGRVEADQLFFNETVEFVITAVAENGEKGSNRGTTTFVCRGPD*