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PLM1_60_b1_redo_sep16_scaffold_1830

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_1830_1
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(42..875)
DNA (834bp) protein (278aa)
Uncharacterized protein Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YMY8_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD60453.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
PLM1_60_b1_redo_sep16_scaffold_1830_2
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(951..1229)
DNA (279bp) protein (93aa)
Uncharacterized protein Tax=Amycolatopsis RepID=G0G677_AMYMS
Uncharacterized protein {ECO:0000313|EMBL:KDN19860.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1830_3
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(1349..2665)
DNA (1317bp) protein (439aa)
peptidase U62 Tax=Salinispora pacifica RepID=UPI00036E6093
Protein pmbA
Protein pmbA {ECO:0000313|EMBL:AEV88532.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
PLM1_60_b1_redo_sep16_scaffold_1830_4
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(2662..4098)
DNA (1437bp) protein (479aa)
Peptidase U62, modulator of Tax=Micromonospora sp. ATCC 39149 RepID=C4RR41_9ACTO
TldD/PmbA family protein {ECO:0000313|EMBL:EWM67631.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
peptidase U62 modulator of DNA gyrase
PLM1_60_b1_redo_sep16_scaffold_1830_5
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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comp(4215..4496)
DNA (282bp) protein (94aa)
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
4a-hydroxytetrahydrobiopterin dehydratase {ECO:0000256|SAAS:SAAS00118034}; EC=4.2.1.96 {ECO:0000256|SAAS:SAAS00118034};; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
Pterin-4-alpha-carbinolamine dehydratase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LW24_ACIC1
PLM1_60_b1_redo_sep16_scaffold_1830_6
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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4615..6486
DNA (1872bp) protein (624aa)
GTP-binding protein typA/BipA (Tyrosine phosphorylated protein A) Tax=Frankia alni (strain ACN14a) RepID=Q0RCR8_FRAAA
typA; GTP-binding protein TypA
GTP-binding protein typA/BipA (Tyrosine phosphorylated protein A) {ECO:0000313|EMBL:CAJ64756.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM1_60_b1_redo_sep16_scaffold_1830_7
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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7001..8638
DNA (1638bp) protein (546aa)
ABC transporter oligopeptide binding protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0LBV3_9ACTO
ABC transporter oligopeptide binding protein {ECO:0000313|EMBL:CCH21300.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
family 5 extracellular solute-binding protein
PLM1_60_b1_redo_sep16_scaffold_1830_8
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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8733..9659
DNA (927bp) protein (309aa)
Binding-protein-dependent transport systems inner membrane component Tax=Micromonospora RepID=D9TE30_MICAI
ABC transporter permease {ECO:0000313|EMBL:ETK30830.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
binding-protein-dependent transport systems inner membrane component
PLM1_60_b1_redo_sep16_scaffold_1830_9
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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9652..10626
DNA (975bp) protein (325aa)
ABC peptide transporter permease component Tax=Micromonospora sp. ATCC 39149 RepID=C4RAL1_9ACTO
Micromonospora carbonacea strain JXNU-1 contig2, whole genome shotgun sequence {ECO:0000313|EMBL:KIR63069.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
binding-protein-dependent transport systems inner membrane component
PLM1_60_b1_redo_sep16_scaffold_1830_10
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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10637..11677
DNA (1041bp) protein (347aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9TE28_MICAI
oligopeptide/dipeptide ABC transporter ATPase subunit
Oligopeptide/dipeptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:EWM67569.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
PLM1_60_b1_redo_sep16_scaffold_1830_11
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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11670..12683
DNA (1014bp) protein (338aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9TE27_MICAI
oligopeptide/dipeptide ABC transporter ATPase subunit
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADL48910.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_1830_12
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(12920..15022)
DNA (2103bp) protein (701aa)
peptidase S9 Tax=Salinispora pacifica RepID=UPI00036C1BB1
Micromonospora carbonacea strain JXNU-1 contig2, whole genome shotgun sequence {ECO:0000313|EMBL:KIR63128.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
peptidase S9 prolyl oligopeptidase
PLM1_60_b1_redo_sep16_scaffold_1830_13
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15062..15931
DNA (870bp) protein (290aa)
1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase {ECO:0000256|HAMAP-Rule:MF_01696}; Short=GlcNAc-Ins deacetylase {ECO:0000256|HAMAP-Rule:MF_01696};; EC=3.5.1.103 {ECO:0000256|HAMAP-Rule:MF_01696};; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase {ECO:0000256|HAMAP-Rule:MF_01696}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase Tax=Micromonospora sp. (strain L5) RepID=E8SB10_MICSL
1d-myo-inosityl-2-acetamido-2-deoxy-alpha-d-glucopyranoside deacetylase
PLM1_60_b1_redo_sep16_scaffold_1830_14
Gossypium raimondii, Gossypium, Malvales, rosids, Streptophyta, Viridiplantae

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16014..16637
DNA (624bp) protein (208aa)
Uncharacterized protein Tax=Emiliania huxleyi virus 164 RepID=V5LSK2_9PHYC
Uncharacterized protein {ECO:0000313|EMBL:KJB54163.1}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.;" source="Gossypium raimondii (New World cotton).;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1830_15
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16634..18175
DNA (1542bp) protein (514aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MWG4_9ACTO
Serine/arginine repetitive matrix protein 1 {ECO:0000313|EMBL:EWM17577.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
putative RNA polymerase ECF subfamily sigma factor
PLM1_60_b1_redo_sep16_scaffold_1830_16
unknown

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18271..18495
DNA (225bp) protein (75aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1830_17
Gordonia rhizosphera, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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18564..20081
DNA (1518bp) protein (506aa)
Putative RNA polymerase ECF-type sigma factor Tax=Gordonia rhizosphera NBRC 16068 RepID=K6WY41_9ACTO
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAB91479.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia rhizosphera NBRC 16068.;"
putative RNA polymerase ECF subfamily sigma factor
PLM1_60_b1_redo_sep16_scaffold_1830_18
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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20205..21632
DNA (1428bp) protein (476aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MWG4_9ACTO
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACY96843.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_1830_19
unknown

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21697..21987
DNA (291bp) protein (97aa)

This feature has no annotations

Displaying 19 items

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