ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_2425

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_2425_1
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

3..191
DNA (189bp) protein (63aa)
Cupin domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IN49_NITGG
cupin domain-containing protein
Cupin domain-containing protein {ECO:0000313|EMBL:AFU58754.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_2425_2
Mycobacterium gastri, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(604..849)
DNA (246bp) protein (82aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026A7_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:ETW26236.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium gastri 'Wayne'.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2425_3
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(860..1168)
DNA (309bp) protein (103aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01X55_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:EUA14504.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii 732.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2425_4
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1165..3879)
DNA (2715bp) protein (905aa)
Putative uncharacterized protein Tax=Frankia sp. (strain EAN1pec) RepID=A8KXQ4_FRASN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW12838.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_2425_5
unknown

Not on your lists

comp(4771..5358)
DNA (588bp) protein (196aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2425_6
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5498..6040)
DNA (543bp) protein (181aa)
Uncharacterized protein Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SCK0_NOCSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL79535.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM1_60_b1_redo_sep16_scaffold_2425_7
unknown

Not on your lists

comp(6259..6840)
DNA (582bp) protein (194aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2425_8
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6916..7302)
DNA (387bp) protein (129aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI00036EB233
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB74844.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM1_60_b1_redo_sep16_scaffold_2425_9
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7336..7671)
DNA (336bp) protein (112aa)
membrane protein Tax=Actinoplanes globisporus RepID=UPI000369C112
hypothetical protein
UPF0060 membrane protein Tcur_4718 {ECO:0000256|HAMAP-Rule:MF_00010}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_2425_10
unknown

Not on your lists

comp(7739..8005)
DNA (267bp) protein (89aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2425_11
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7989..8432)
DNA (444bp) protein (148aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI0003820427
MerR family transcriptional regulator {ECO:0000313|EMBL:KHD75833.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
regulatory protein, MerR
PLM1_60_b1_redo_sep16_scaffold_2425_12
unknown

Not on your lists

comp(8446..8814)
DNA (369bp) protein (123aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2425_13
unknown

Not on your lists

9371..9610
DNA (240bp) protein (80aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2425_14
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9695..10303)
DNA (609bp) protein (203aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI0003688BD1
Uncharacterized protein {ECO:0000313|EMBL:EON22483.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2425_15
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

10675..11205
DNA (531bp) protein (177aa)
Cyclase-like protein Tax=Oscillatoria sp. PCC 6506 RepID=C4NCB5_9CYAN
Cyclase-like protein {ECO:0000313|EMBL:ACR33072.1}; Putative cylclase {ECO:0000313|EMBL:CBN59188.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
lipocalin-like domain protein
PLM1_60_b1_redo_sep16_scaffold_2425_16
unknown

Not on your lists

11977..12174
DNA (198bp) protein (66aa)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000371B569
PLM1_60_b1_redo_sep16_scaffold_2425_17
unknown

Not on your lists

12719..13033
DNA (315bp) protein (105aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000377A285
PLM1_60_b1_redo_sep16_scaffold_2425_18
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13034..13231)
DNA (198bp) protein (66aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI0003631F8B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA26217.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM1_60_b1_redo_sep16_scaffold_2425_19
unknown

Not on your lists

comp(13292..13399)
DNA (108bp) protein (36aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2425_20
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

13510..14889
DNA (1380bp) protein (460aa)
glycosyl hydrolase bin=bin8_Chloro species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
Tax=CSP1_4_Chloroflexi
PLM1_60_b1_redo_sep16_scaffold_2425_21
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15001..15420
DNA (420bp) protein (140aa)
Integrase catalytic region Tax=Frankia sp. CN3 RepID=G6HFD2_9ACTO
Transposase {ECO:0000313|EMBL:EIV92822.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
integrase catalytic subunit
PLM1_60_b1_redo_sep16_scaffold_2425_22
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15417..15674
DNA (258bp) protein (86aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000369E722
transposase
Putative transposase {ECO:0000313|EMBL:ABD13515.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
PLM1_60_b1_redo_sep16_scaffold_2425_23
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

16543..16806
DNA (264bp) protein (88aa)
Transposase Tax=Amycolatopsis mediterranei RepID=G0FZ45_AMYMS
transposase
Tax=RBG_16_Actinobacteria_68_12_curated
PLM1_60_b1_redo_sep16_scaffold_2425_24
Corynebacterium efficiens, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16967..17248
DNA (282bp) protein (94aa)
Transposase, IS4 family Tax=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) RepID=C8NSA1_COREF
transposase
Putative transposase {ECO:0000313|EMBL:BAC18631.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM; 11189 / NBRC 100395).;"
PLM1_60_b1_redo_sep16_scaffold_2425_25
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17318..17743)
DNA (426bp) protein (142aa)
Transposase IS4 family protein Tax=Streptomyces davawensis JCM 4913 RepID=K4RFT3_9ACTO
transposase IS4 family protein
Transposase IS4 family protein {ECO:0000313|EMBL:CCK32763.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
PLM1_60_b1_redo_sep16_scaffold_2425_26
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18094..18450)
DNA (357bp) protein (119aa)
Uncharacterized protein (Fragment) Tax=Frankia sp. EUN1f RepID=D3D265_9ACTO
Transposase IS4 family protein {ECO:0000313|EMBL:EFC83735.1}; Flags: Fragment;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2425_27
unknown

Not on your lists

18780..19178
DNA (399bp) protein (133aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2425_28
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

19190..19495
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Nitrolancetus hollandicus Lb RepID=I4EFA5_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF83367.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
XRE family transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_2425_29
unknown

Not on your lists

19752..19868
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 29 items

View Taxonomy