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PLM4_5_b1_sep16_scaffold_139

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_139_1
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(2..775)
DNA (774bp) protein (258aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00035C43EF
type 11 methyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_5_b1_sep16_scaffold_139_2
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(799..1038)
DNA (240bp) protein (80aa)
Putative transmembrane anti-sigma factor Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DG69_9GAMM
anti-sigma factor
Anti-sigma factor {ECO:0000313|EMBL:AHE97056.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
PLM4_5_b1_sep16_scaffold_139_3
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(1040..1687)
DNA (648bp) protein (216aa)
RNA polymerase subunit sigma-24 Tax=Fodinicurvata sediminis RepID=UPI0003B60941
rpoE_[H]; RNA polymerase sigma-54 factor RpoN
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM4_5_b1_sep16_scaffold_139_4
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1829..2617
DNA (789bp) protein (263aa)
Methyltransferase type 11 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12A81_POLSJ
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABE44561.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
PLM4_5_b1_sep16_scaffold_139_5
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2713..3180
DNA (468bp) protein (156aa)
Truncated hemoglobin Tax=Azoarcus sp. KH32C RepID=H0Q5T0_9RHOO
truncated hemoglobin
Truncated hemoglobin {ECO:0000313|EMBL:BAL27343.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
PLM4_5_b1_sep16_scaffold_139_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3263..4147)
DNA (885bp) protein (295aa)
Sporulation related protein Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QLN5_AZOSU
sporulation-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_139_7
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4239..6800
DNA (2562bp) protein (854aa)
Leucine--tRNA ligase Tax=Azoarcus sp. (strain BH72) RepID=SYL_AZOSB
leuS; leucyl-tRNA synthetase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_139_8
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6797..7282
DNA (486bp) protein (162aa)
Lipoprotein B transmembrane protein Tax=Herbaspirillum frisingense GSF30 RepID=R0GCG2_9BURK
LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_139_9
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7288..8292
DNA (1005bp) protein (335aa)
holA; DNA polymerase III subunit delta (EC:2.7.7.7)
DNA polymerase III (Delta subunit) protein Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IYF2_HERSS
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_139_10
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8276..9544
DNA (1269bp) protein (423aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=PROA_NITMU
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_139_11
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9544..10089
DNA (546bp) protein (182aa)
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase Tax=Laribacter hongkongensis (strain HLHK9) RepID=NADD_LARHH
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_5_b1_sep16_scaffold_139_12
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10089..10478
DNA (390bp) protein (130aa)
hypothetical protein Tax=Herbaspirillum lusitanum RepID=UPI00031C8B0A
iojap family protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_139_13
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10444..10842
DNA (399bp) protein (133aa)
Ribosomal RNA large subunit methyltransferase H Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=RLMH_POLSQ
rRNA large subunit methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_139_14
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10910..11554
DNA (645bp) protein (215aa)
septum formation inhibitor Maf Tax=Azoarcus toluclasticus RepID=UPI000376B873
maf protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_139_15
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11544..12989
DNA (1446bp) protein (482aa)
cafA; putative ribonuclease (EC:3.1.4.-)
Putative ribonuclease Tax=Azoarcus sp. (strain BH72) RepID=A1KBM2_AZOSB
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_139_16
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13000..16110)
DNA (3111bp) protein (1037aa)
Transcriptional regulator, XRE family Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WA3_RHOFD
XRE family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_5_b1_sep16_scaffold_139_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16129..16590
DNA (462bp) protein (154aa)
Cupin region Tax=Variovorax paradoxus (strain S110) RepID=C5CTH6_VARPS
cupin region
Cupin region {ECO:0000313|EMBL:ACS20164.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
PLM4_5_b1_sep16_scaffold_139_18
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16601..17413
DNA (813bp) protein (271aa)
Methyltransferase type 11 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21WA1_RHOFD
type 11 methyltransferase
Tax=RBG_16_Gamma2_60_9_curated
PLM4_5_b1_sep16_scaffold_139_19
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

17430..18365
DNA (936bp) protein (312aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N0N1_ANATU
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM4_5_b1_sep16_scaffold_139_20
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18421..19821
DNA (1401bp) protein (467aa)
Amidase (EC:3.5.1.4)
Amidase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1CA12_SPHTD
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_5_b1_sep16_scaffold_139_21
unknown

Not on your lists

19995..20936
DNA (942bp) protein (314aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_139_22
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21120..21305
DNA (186bp) protein (62aa)
HigA family addiction module antidote protein
Plasmid maintenance system antidote protein, XRE family bin=GWC2_Methylomirabilis_70_16 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_139_23
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21340..21963
DNA (624bp) protein (208aa)
Methyltransferase type 11 Tax=Shewanella loihica (strain ATCC BAA-1088 / PV-4) RepID=A3QBF6_SHELP
type 11 methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_139_24
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21965..22939)
DNA (975bp) protein (325aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI00031DF7BD
tctC4; tricarboxylate binding receptor
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_5_b1_sep16_scaffold_139_trna_1
unknown

Not on your lists

comp(23037..23110)
DNA (74bp)
transferRNA Arg
PLM4_5_b1_sep16_scaffold_139_25
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23174..24118
DNA (945bp) protein (315aa)
Glutathione synthetase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QH63_AZOSU
glutathione synthetase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_139_26
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24115..24516
DNA (402bp) protein (134aa)
PTS system fructose subfamily IIA component Tax=Methylovorus RepID=C6X8H7_METSD
PTS system fructose subfamily transporter subunit IIA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_139_27
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24509..24778
DNA (270bp) protein (90aa)
Putative phosphocarrier protein HPr Tax=Azoarcus sp. (strain BH72) RepID=A1KC41_AZOSB
ptsH; putative phosphocarrier protein HPr
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_5_b1_sep16_scaffold_139_28
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24775..26499
DNA (1725bp) protein (575aa)
Phosphoenolpyruvate-protein phosphotransferase Tax=Nitrosospira sp. APG3 RepID=M5DF73_9PROT
phosphoenolpyruvate-protein phosphotransferase
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_139_29
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26508..27704
DNA (1197bp) protein (399aa)
Putative dehydratase/racemase Tax=Bordetella bronchiseptica (strain MO149) RepID=K0N4C5_BORBM
dehydratase/racemase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
Displaying items 1-30 of 122 in total

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