ggKbase home page

PLM4_5_b1_sep16_scaffold_3938

Search features with annotation key words

Displaying 17 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_3938_1
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(3..77)
DNA (75bp) protein (25aa)
Chaperone protein DnaK Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZKM3_TERRK
chaperone DnaK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
PLM4_5_b1_sep16_scaffold_3938_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(175..627)
DNA (453bp) protein (151aa)
Heat shock protein Hsp20 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML01_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
heat shock protein Hsp20
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(886..1332)
DNA (447bp) protein (149aa)
NADH-quinone oxidoreductase subunit I Tax=Roseiflexus RepID=A5UVG1_ROSS1 bin=16ft_combo_ws3_JS1 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
NADH-quinone oxidoreductase subunit I
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1415..1969)
DNA (555bp) protein (185aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase Tax=uncultured Chloroflexi bacterium RepID=H5SLA3_9CHLR bin=16ft_combo_ws3_JS1 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1971..2510)
DNA (540bp) protein (180aa)
Molybdenum cofactor synthesis domain protein Tax=Pleurocapsa sp. PCC 7327 RepID=K9T1M0_9CYAN bin=16ft_combo_ws3_JS1 species=Pleurocapsa minor genus=Pleurocapsa taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
molybdenum cofactor biosynthesis protein B
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2507..4153)
DNA (1647bp) protein (549aa)
Phenylacetic acid degradation protein PaaY Tax=Streptomyces sp. C RepID=D9VKR1_9ACTO bin=16ft_combo_ws3_JS1 species=Streptomyces sp. C genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ferripyochelin-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4164..4808)
DNA (645bp) protein (215aa)
Beta-lactamase domain protein Tax=Magnetococcus sp. (strain MC-1) RepID=A0LDZ9_MAGSM bin=16ft_combo_ws3_JS1 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
beta-lactamase domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_8
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4837..5322)
DNA (486bp) protein (162aa)
Uncharacterized protein Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8F956_DESAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL02802.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
PLM4_5_b1_sep16_scaffold_3938_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(5359..6705)
DNA (1347bp) protein (449aa)
hypothetical protein PspoU_19881 Tax=Pseudoalteromonas spongiae UST010723-006 RepID=UPI00026C91BA bin=16ft_combo_ws3_JS1 species=Pseudoalteromonas spongiae genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6883..7635)
DNA (753bp) protein (251aa)
tol-pal system protein YbgF bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
tol-pal system protein YbgF
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7632..8162)
DNA (531bp) protein (177aa)
Peptidoglycan-associated lipoprotein Tax=Geobacter sp. (strain FRC-32) RepID=B9M348_GEOSF bin=16ft_combo_ws3_JS1 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
peptidoglycan-associated lipoprotein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8159..9496)
DNA (1338bp) protein (446aa)
tolB; protein TolB; K03641 TolB protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
biopolymer transport TolB-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9493..10155)
DNA (663bp) protein (221aa)
Periplasmic protein TonB Tax=uncultured candidate division WS3 bacterium RepID=Q2YZV9_9BACT bin=16ft_combo_ws3_JS1 species=uncultured Latescibacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Latescibacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TonB family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10160..10573)
DNA (414bp) protein (138aa)
tolR protein; K03560 biopolymer transport protein TolR bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ExbD/TolR-like biopolymer transport membrane protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10570..11295)
DNA (726bp) protein (242aa)
tolQ protein; K03562 biopolymer transport protein TolQ bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Cell division and transport-associated protein TolQ
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11654..12142
DNA (489bp) protein (163aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=Geobacter sp. (strain FRC-32) RepID=B9M421_GEOSF bin=16ft_combo_ws3_JS1 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
alkyl hydroperoxide reductase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3938_17
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12145..13443)
DNA (1299bp) protein (433aa)
Peptidoglycan lytic exotransglycosylase {ECO:0000256|SAAS:SAAS00166192}; EC=4.2.2.n1 {ECO:0000256|SAAS:SAAS00166192};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
Putative soluble Lytic transglycosylase Tax=Burkholderia sp. RPE64 RepID=R4WPR8_9BURK
putative soluble Lytic transglycosylase
Displaying 17 items

View Taxonomy