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PLM4_5_b1_sep16_scaffold_5533

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_5533_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3..1295)
DNA (1293bp) protein (431aa)
Uncharacterized protein Tax=Phytophthora ramorum RepID=H3GMJ7_PHYRM bin=16ft_combo_ws3_JS1 species=Phytophthora ramorum genus=Phytophthora taxon_order=Peronosporales taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_5533_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1292..2272)
DNA (981bp) protein (327aa)
Pectinesterase Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5B676_9MICO bin=16ft_combo_ws3_JS1 species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_5533_3
RBG_13_RIF_OD1_08_41_18_curated, RIF-OD1-8, Parcubacteria, Bacteria

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comp(2302..3132)
DNA (831bp) protein (277aa)
Ig-like domain-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_13_RIF_OD1_08_41_18_curated
PLM4_5_b1_sep16_scaffold_5533_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3735..4856
DNA (1122bp) protein (374aa)
pilus retraction protein PilT; K02669 twitching motility protein PilT bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
twitching motility protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_5533_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4859..5608
DNA (750bp) protein (250aa)
tapB; type IV pilus assembly protein tapB bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
type II secretion system protein E
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 5 items

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