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PLM4_32_b1_sep16_scaffold_3837

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_3837_1
unknown

Not on your lists

comp(3..62)
DNA (60bp) protein (20aa)

This feature has no annotations

PLM4_32_b1_sep16_scaffold_3837_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(84..2198)
DNA (2115bp) protein (705aa)
Elongation factor G 1 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fusA-3; elongation factor G
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


comp(2282..2749)
DNA (468bp) protein (156aa)
30S ribosomal protein S7 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S7
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


comp(2751..3134)
DNA (384bp) protein (128aa)
30S ribosomal protein S12 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsL; 30S ribosomal protein S12
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3235..5964)
DNA (2730bp) protein (910aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5934..7352)
DNA (1419bp) protein (473aa)
DNA-directed RNA polymerase subunit beta' bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-directed RNA polymerase subunit beta'
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7366..10746)
DNA (3381bp) protein (1127aa)
rpoB; RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


comp(11512..11895)
DNA (384bp) protein (128aa)
50S ribosomal protein L7/L12 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplL; 50S ribosomal protein L7/L12
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


comp(11948..12466)
DNA (519bp) protein (173aa)
50S ribosomal protein L10 bin=GWF2_Methylomirabilis_70_14 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L10
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


comp(12479..13192)
DNA (714bp) protein (238aa)
50S ribosomal protein L1 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplA; 50S ribosomal protein L1
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


comp(13339..13761)
DNA (423bp) protein (141aa)
50S ribosomal protein L11 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplK; 50S ribosomal protein L11
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13763..14311)
DNA (549bp) protein (183aa)
Transcription antitermination protein nusG bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription antitermination protein nusG
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14308..14499)
DNA (192bp) protein (64aa)
Preprotein translocase, SecE subunit bin=GWF2_Methylomirabilis_70_14 species=Ruminococcus albus genus=Ruminococcus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
secE; protein SecE
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_trna_1
unknown

Not on your lists

comp(14522..14595)
DNA (74bp)
transferRNA Trp
PLM4_32_b1_sep16_scaffold_3837_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


comp(14608..14757)
DNA (150bp) protein (50aa)
50S ribosomal protein L33 bin=GWF2_Methylomirabilis_70_14 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmG; 50S ribosomal protein L33
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_3837_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14761..15900)
DNA (1140bp) protein (380aa)
tuf; elongation factor Tu (EC:3.6.5.3)
translation elongation factor 1A (EF-1A/EF-Tu); K02358 elongation factor Tu bin=bin7_NC10_sister species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
Displaying 16 items

View Taxonomy