ggKbase home page

PLM4_65_coex_sep16_scaffold_3395

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_3395_1
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..101)
DNA (99bp) protein (33aa)
Uncharacterized protein Tax=Geobacter metallireducens RepID=Q39Z47_GEOMG
hypothetical protein
Tax=GWC2_Geobacteraceae_58_44_curated
PLM4_65_coex_sep16_scaffold_3395_2
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(484..1563)
DNA (1080bp) protein (360aa)
Pilus retraction ATPase PilT Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9E9_GEOUR
twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:KIE41138.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
PLM4_65_coex_sep16_scaffold_3395_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1582..3231)
DNA (1650bp) protein (550aa)
General secretory system II, protein E domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9E8_GEOUR
general secretion pathway protein E
General secretory system II, protein E domain protein {ECO:0000313|EMBL:ABQ28416.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3395_4
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3559..4989)
DNA (1431bp) protein (477aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Nicotinate phosphoribosyltransferase Tax=Geobacter metallireducens RepID=Q39T26_GEOMG
nicotinate phosphoribosyltransferase
PLM4_65_coex_sep16_scaffold_3395_5
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5117..6217)
DNA (1101bp) protein (367aa)
Cell elongation-specific peptidoglycan biosynthesis regulator RodA Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5G2_GEOUR
rod shape-determining protein RodA
Cell elongation-specific peptidoglycan biosynthesis regulator RodA {ECO:0000313|EMBL:ABQ27030.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3395_6
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6277..8223)
DNA (1947bp) protein (649aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:ABQ27031.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ABQ27031.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Peptidoglycan glycosyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5G3_GEOUR
PLM4_65_coex_sep16_scaffold_3395_7
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8220..8705)
DNA (486bp) protein (162aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5G4_GEOUR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27032.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3395_8
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8713..9537)
DNA (825bp) protein (275aa)
Cell shape-determining protein MreC Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5G5_GEOUR
rod shape-determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3395_9
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9683..10168)
DNA (486bp) protein (162aa)
Nucleoside diphosphate-sugar dehydratase, putative Tax=Geobacter sulfurreducens RepID=D7AL62_GEOSK
Putative low-salt glycan biosynthesis epimerase Agl13 {ECO:0000313|EMBL:GAM08171.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
dTDP-4-dehydrorhamnose 3,5-epimerase
PLM4_65_coex_sep16_scaffold_3395_10
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10180..11064)
DNA (885bp) protein (295aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
Glucose-1-phosphate thymidylyltransferase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5G7_GEOUR
glucose-1-phosphate thymidylyltransferase
PLM4_65_coex_sep16_scaffold_3395_11
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11170..11733)
DNA (564bp) protein (188aa)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
D,D-heptose 1,7-bisphosphate phosphatase Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5G8_GEOUR
D,D-heptose 1,7-bisphosphate phosphatase
PLM4_65_coex_sep16_scaffold_3395_12
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11726..13192)
DNA (1467bp) protein (489aa)
Bifunctional protein HldE {ECO:0000255|HAMAP-Rule:MF_01603}; Includes:; D-beta-D-heptose 7-phosphate kinase {ECO:0000255|HAMAP-Rule:MF_01603}; EC=2.7.1.167 {ECO:0000255|HAMAP-Rule:MF_01603};; D-beta-D-heptose 7-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_01603}; D-glycero-beta-D-manno-heptose-7-phosphate kinase {ECO:0000255|HAMAP-Rule:MF_01603}; Includes:; D-beta-D-heptose 1-phosphate adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_01603}; EC=2.7.7.70 {ECO:0000255|HAMAP-Rule:MF_01603};; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_01603}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210).;"
Bifunctional protein HldE Tax=Geobacter metallireducens RepID=HLDE_GEOMG
hldE; D-glycero-D-mannoheptose-7-phosphate kinase and D-glycero-D-mannoheptose-1-phosphate adenylyltransferase
PLM4_65_coex_sep16_scaffold_3395_13
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13229..13801)
DNA (573bp) protein (191aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00067}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
Phosphoheptose isomerase Tax=Geobacter sulfurreducens (strain DL-1 / KN400) RepID=D7AL67_GEOSK
gmhA; D-sedoheptulose-7-phosphate isomerase
PLM4_65_coex_sep16_scaffold_3395_14
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13852..14907)
DNA (1056bp) protein (352aa)
Glycosyl transferase, family 2 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5H0_GEOUR
glycosyl transferase family protein
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABQ27038.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_65_coex_sep16_scaffold_3395_15
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15048..15509)
DNA (462bp) protein (154aa)
Rod shape-determining protein MreB Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5H1_GEOUR
rod shape-determining protein MreB
Rod shape-determining protein MreB {ECO:0000313|EMBL:AJE02852.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
PLM4_65_coex_sep16_scaffold_3395_16
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15475..15981)
DNA (507bp) protein (169aa)
Rod shape-determining protein MreB Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5H1_GEOUR
Rod shape-determining protein MreB {ECO:0000313|EMBL:GAM08176.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
rod shape-determining protein MreB
PLM4_65_coex_sep16_scaffold_3395_17
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17246..19354
DNA (2109bp) protein (703aa)
Ligand-gated TonB-dependent outer membrane channel Tax=Geobacter sulfurreducens RepID=D7ADZ0_GEOSK
ligand-gated TonB-dependent outer membrane channel
Ligand-gated TonB-dependent outer membrane channel {ECO:0000313|EMBL:AAR36374.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM4_65_coex_sep16_scaffold_3395_18
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19424..20218
DNA (795bp) protein (265aa)
Periplasmic energy transduction protein, TonB-related bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
periplasmic energy transduction protein
Tax=GWD2_Desulfuromonadales_54_10_curated
PLM4_65_coex_sep16_scaffold_3395_19
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20239..20739
DNA (501bp) protein (167aa)
Putative uncharacterized protein Tax=Geobacter metallireducens RCH3 RepID=H1L286_GEOME
Uncharacterized protein {ECO:0000313|EMBL:KIE44263.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
hypothetical protein
Displaying 19 items

View Taxonomy