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PLM4_65_coex_sep16_scaffold_2075

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2075_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..286)
DNA (285bp) protein (95aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_2075_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(286..855)
DNA (570bp) protein (190aa)
Uncharacterized protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_2075_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(852..2306)
DNA (1455bp) protein (485aa)
Fimbrial assembly family protein bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fimbrial assembly family protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_2075_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2371..3330)
DNA (960bp) protein (320aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
general secretion pathway protein K
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_2075_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3327..3947)
DNA (621bp) protein (207aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_2075_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3944..4345)
DNA (402bp) protein (134aa)
Putative General secretion pathway protein I, GspI (Modular protein) bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein I
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_2075_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4342..4794)
DNA (453bp) protein (151aa)
General secretion pathway protein H bin=GWC2_Methylomirabilis_70_16 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein H
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_2075_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4773..5135)
DNA (363bp) protein (121aa)
Pseudopilin, cryptic, general secretion pathway bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein G
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_2075_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5132..6343)
DNA (1212bp) protein (404aa)
gspF; general secretory pathway component, cryptic bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
gspF; general secretory pathway component, cryptic
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_2075_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6348..8039)
DNA (1692bp) protein (564aa)
General secretion pathway protein E (Type II traffic warden ATPase) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
General secretion pathway protein E (Type II traffic warden ATPase)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_2075_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8057..8788
DNA (732bp) protein (244aa)
Zinc/iron transporter bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Zinc/iron transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_2075_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8788..9270
DNA (483bp) protein (161aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_2075_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9304..10362
DNA (1059bp) protein (353aa)
RNA polymerase sigma-E factor bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma-E factor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_2075_14
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

10568..11740
DNA (1173bp) protein (391aa)
Extracellular ligand-binding receptor bin=GWC2_Elusimicrobia_64_44 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
extracellular ligand-binding receptor
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_65_coex_sep16_scaffold_2075_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11766..13445
DNA (1680bp) protein (560aa)
Histidine kinase, HAMP region:chemotaxis sensory transducer bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine kinase, HAMP region:chemotaxis sensory transducer
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_coex_sep16_scaffold_2075_16
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

comp(13455..15095)
DNA (1641bp) protein (547aa)
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=GPI {ECO:0000255|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000255|HAMAP-Rule:MF_00473};; Phosphoglucose isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=PGI {ECO:0000255|HAMAP-Rule:MF_00473};; Phosphohexose isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=PHI {ECO:0000255|HAMAP-Rule:MF_00473};; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
Glucose-6-phosphate isomerase Tax=Gloeobacter violaceus (strain PCC 7421) RepID=G6PI_GLOVI
PLM4_65_coex_sep16_scaffold_2075_17
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(15107..15781)
DNA (675bp) protein (225aa)
rpiA; ribose 5-phosphate isomerase (Phosphoriboisomerase A) (PRI) (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
Ribose-5-phosphate isomerase A Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHI2_9BACT
PLM4_65_coex_sep16_scaffold_2075_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15819..17351
DNA (1533bp) protein (511aa)
Putative propionyl-CoA carboxylase beta subunit bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
propionyl-CoA carboxylase subunit beta
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_2075_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17725..18219)
DNA (495bp) protein (165aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 19 items

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