ggKbase home page

PLM4_65_coex_sep16_scaffold_5654

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_5654_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(2..343)
DNA (342bp) protein (114aa)
30S ribosomal protein S1; K02945 small subunit ribosomal protein S1 bin=CNBR_ACIDO species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S1
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_5654_2
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(477..893)
DNA (417bp) protein (139aa)
Probable ribonuclease VapC bin=GWB2_Nitrospirae_rel_47_37 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
PilT domain-containing protein
Tax=RBG_13_Nitrospirae_41_22_curated
PLM4_65_coex_sep16_scaffold_5654_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(890..1159)
DNA (270bp) protein (90aa)
id=4202597 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_coex_sep16_scaffold_5654_4
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

1233..3161
DNA (1929bp) protein (643aa)
family 5 extracellular solute-binding protein bin=GWB2_Chloroflexi_54_36 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
twin-arginine translocation pathway signal
Tax=GWB2_Chloroflexi_54_36_curated
PLM4_65_coex_sep16_scaffold_5654_5
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

3168..4157
DNA (990bp) protein (330aa)
putative oligopeptide ABC transporter permease bin=GWB2_Chloroflexi_54_36 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
binding-protein-dependent transport system inner membrane protein
Tax=GWB2_Chloroflexi_54_36_curated
PLM4_65_coex_sep16_scaffold_5654_6
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

4150..5274
DNA (1125bp) protein (375aa)
binding-protein-dependent transport system inner membrane protein bin=GWB2_Chloroflexi_54_36 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
binding-protein-dependent transport systems inner membrane component
Tax=GWB2_Chloroflexi_54_36_curated
PLM4_65_coex_sep16_scaffold_5654_7
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

5274..6305
DNA (1032bp) protein (344aa)
oligopeptide/dipeptide ABC transporter, ATPase subunit bin=GWB2_Chloroflexi_54_36 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
oligopeptide/dipeptide ABC transporter, ATPase subunit
Tax=GWB2_Chloroflexi_54_36_curated
PLM4_65_coex_sep16_scaffold_5654_8
RBG_13_Spirochaetes_68_11_curated, Spirochaetes, Bacteria

Not on your lists

6302..7237
DNA (936bp) protein (312aa)
oligopeptide/dipeptide ABC transporter ATPase bin=GWB2_Chloroflexi_54_36 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
oligopeptide/dipeptide ABC transporter, ATPase subunit
Tax=RBG_13_Spirochaetes_68_11_curated
Displaying 8 items

View Taxonomy