ggKbase home page

PLM4_65_coex_sep16_scaffold_14688

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_14688_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1..303
DNA (303bp) protein (101aa)
50S ribosomal protein L6 bin=GWF2_Methylomirabilis_70_14 species=Slackia heliotrinireducens genus=Slackia taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplF; 50S ribosomal protein L6
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_14688_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


300..665
DNA (366bp) protein (122aa)
50S ribosomal protein L18 bin=GWC2_Methylomirabilis_70_16 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplR; 50S ribosomal protein L18
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_14688_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


841..1377
DNA (537bp) protein (179aa)
30S ribosomal protein S5 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsE; 30S ribosomal protein S5
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_14688_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


1358..1546
DNA (189bp) protein (63aa)
50S ribosomal protein L30 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmD; 50S ribosomal protein L30
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_14688_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


1536..2009
DNA (474bp) protein (158aa)
50S ribosomal protein L15 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L15
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_14688_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2006..2581
DNA (576bp) protein (192aa)
Suspect SCG annotation. See neighboring gene [PLM4_65_coex_sep16_scaffold_14688_7].
Protein translocase subunit SecY bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
secY; preprotein translocase subunit SecY
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_14688_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


2542..3429
DNA (888bp) protein (296aa)
Protein translocase subunit SecY bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_14688_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3432..4082
DNA (651bp) protein (217aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate kinase (EC:2.7.4.3)
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_14688_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4079..4654
DNA (576bp) protein (192aa)
Methionine aminopeptidase bin=GWA2_Methylomirabilis_73_35 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methionine aminopeptidase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_14688_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4678..4896
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infA; translation initiation factor IF-1
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_14688_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4910..5023
DNA (114bp) protein (38aa)
50S ribosomal protein L36 bin=GWA2_Methylomirabilis_73_35 species=Propionibacterium freudenreichii genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_14688_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists


5036..5455
DNA (420bp) protein (140aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
30S ribosomal protein S13
Tax=CSP1_6_Rokubacteria
PLM4_65_coex_sep16_scaffold_14688_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


5459..5866
DNA (408bp) protein (136aa)
30S ribosomal protein S11 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S11
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_14688_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


5879..6502
DNA (624bp) protein (208aa)
30S ribosomal protein S4 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsD; 30S ribosomal protein S4
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_14688_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6519..7499
DNA (981bp) protein (327aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_14688_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


7692..8009
DNA (318bp) protein (106aa)
50S ribosomal protein L17 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L17
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Displaying 16 items

View Taxonomy