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PLM0_60_coex_redo_sep16_scaffold_3189

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM0_60_coex_redo_sep16_scaffold_3189_1
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..407
DNA (405bp) protein (135aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00036DEB7B
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family protein {ECO:0000313|EMBL:ADI08999.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
PLM0_60_coex_redo_sep16_scaffold_3189_2
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

941..1549
DNA (609bp) protein (203aa)
RNA polymerase sigma-70 factor, sigma-E family Tax=Frankia sp. QA3 RepID=I8QHC0_9ACTO
RNA polymerase sigma-70 factor, sigma-E family {ECO:0000313|EMBL:EIV91707.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
Fis family transcriptional regulator
PLM0_60_coex_redo_sep16_scaffold_3189_trna_3
unknown

Not on your lists

comp(1586..1659)
DNA (74bp)
transferRNA Pro
PLM0_60_coex_redo_sep16_scaffold_3189_3
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1675..1920)
DNA (246bp) protein (82aa)
hypothetical protein Tax=Nodosilinea nodulosa RepID=UPI0002D4AFE4
Hypothetical Protein
Uncharacterized protein {ECO:0000313|EMBL:AHY45632.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM0_60_coex_redo_sep16_scaffold_3189_4
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(1926..2837)
DNA (912bp) protein (304aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003704046
Uncharacterized protein {ECO:0000313|EMBL:EFH84549.1}; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
hypothetical protein
PLM0_60_coex_redo_sep16_scaffold_3189_5
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists


comp(3111..3710)
DNA (600bp) protein (200aa)
Non-canonical purine NTP pyrophosphatase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N0Q1_ANATU
HAM1 protein
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM0_60_coex_redo_sep16_scaffold_3189_6
Leptospirillum ferriphilum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(3703..4431)
DNA (729bp) protein (243aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferriphilum (strain ML-04).;"
ribonuclease PH Tax=Ideonella sp. B508-1 RepID=UPI0003457C3F
ribonuclease PH
PLM0_60_coex_redo_sep16_scaffold_3189_7
RIFOXYB2_FULL_Elusimicrobia_48_7_curated, Elusimicrobia, Bacteria

Not on your lists

comp(4428..5126)
DNA (699bp) protein (233aa)
Sec-independent protein translocase protein TatC Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LFV7_THEPS
tatC; twin arginine-targeting protein translocase TatC
Tax=RIFOXYB2_FULL_Elusimicrobia_48_7_curated
PLM0_60_coex_redo_sep16_scaffold_3189_8
Megamonas funiformis CAG:377, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(5188..5436)
DNA (249bp) protein (83aa)
hypothetical protein Tax=Megamonas rupellensis RepID=UPI000379BAA2
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas; environmental samples.;" source="Megamonas funiformis CAG:377.;"
twin-arginine translocation protein, TatA/E family subunit
PLM0_60_coex_redo_sep16_scaffold_3189_9
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(5486..6181)
DNA (696bp) protein (232aa)
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G789_CHLAD
Tax=RBG_16_Chloroflexi_68_14_curated
PLM0_60_coex_redo_sep16_scaffold_3189_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(6178..7608)
DNA (1431bp) protein (477aa)
Uroporphyrinogen-III methylase and Uroporphyrinogen-III synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN39_9BACT
Uroporphyrinogen-III methylase and Uroporphyrinogen-III synthase
Uroporphyrinogen-III methylase and Uroporphyrinogen-III synthase {ECO:0000313|EMBL:CBE68141.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM0_60_coex_redo_sep16_scaffold_3189_11
Desulfosporosinus sp. OT, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7641..8585)
DNA (945bp) protein (315aa)
trans-hexaprenyltranstransferase (EC:2.5.1.30)
Polyprenyl synthetase family protein Tax=Desulfosporosinus sp. OT RepID=G2FVU9_9FIRM
Polyprenyl synthetase family protein {ECO:0000313|EMBL:EGW38221.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. OT.;"
PLM0_60_coex_redo_sep16_scaffold_3189_12
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8600..8803)
DNA (204bp) protein (68aa)
Tax=RBG_16_Gamma2_65_34_curated
PLM0_60_coex_redo_sep16_scaffold_3189_13
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

comp(8797..9375)
DNA (579bp) protein (193aa)
glutamate racemase (EC:5.1.1.3)
Glutamate racemase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVL4_RUBXD
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM0_60_coex_redo_sep16_scaffold_3189_14
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9401..10057)
DNA (657bp) protein (219aa)
hypothetical protein Tax=Alicyclobacillus pohliae RepID=UPI00036CF158
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADG82084.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
PLM0_60_coex_redo_sep16_scaffold_3189_15
unknown

Not on your lists

comp(10120..10449)
DNA (330bp) protein (110aa)

This feature has no annotations

PLM0_60_coex_redo_sep16_scaffold_3189_trna_2
unknown

Not on your lists

comp(10473..10545)
DNA (73bp)
transferRNA Leu
PLM0_60_coex_redo_sep16_scaffold_3189_16
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10569..11429)
DNA (861bp) protein (287aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase Tax=Rhodococcus sp. TFB RepID=B8X9Y1_9NOCA
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AII11053.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia opaca).;"
PLM0_60_coex_redo_sep16_scaffold_3189_17
RIFOXYA2_FULL_Elusimicrobia_53_38_curated, Elusimicrobia, Bacteria

Not on your lists

11440..11742
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=Corynebacterium glutamicum RepID=I0LND9_CORGK
hypothetical protein
Tax=RIFOXYA2_FULL_Elusimicrobia_53_38_curated
PLM0_60_coex_redo_sep16_scaffold_3189_18
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(11739..12185)
DNA (447bp) protein (149aa)
Flavin reductase domain protein FMN-binding protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C834_SPHTD
flavin reductase domain-containing protein FMN-binding protein
Flavin reductase domain protein FMN-binding protein {ECO:0000313|EMBL:ACZ39977.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM0_60_coex_redo_sep16_scaffold_3189_trna_1
unknown

Not on your lists

12280..12350
DNA (71bp)
transferRNA Cys
PLM0_60_coex_redo_sep16_scaffold_3189_19
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

12747..13919
DNA (1173bp) protein (391aa)
Glucose/sorbosone dehydrogenase-like protein bin=GWC2_Deltaproteobacteria_66_88 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_16_Chloroflexi_52_11_curated
Displaying 22 items

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