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PLM3-1_170_b2_sep16_scaffold_19

Search features with annotation key words

Displaying items 31-60 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_19_trna_6
unknown

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comp(23652..23724)
DNA (73bp)
transferRNA Ala
PLM3-1_170_b2_sep16_scaffold_19_31
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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23800..25194
DNA (1395bp) protein (465aa)
dihydropyrimidinase (EC:3.5.2.2); K01464 dihydropyrimidinase [EC:3.5.2.2] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
dihydropyrimidinase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_32
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(25186..25863)
DNA (678bp) protein (226aa)
rpiA; ribose 5-phosphate isomerase A (EC:5.3.1.6)
ribose 5-phosphate isomerase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_33
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(25864..26766)
DNA (903bp) protein (301aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BCC5_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFS81996.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
PLM3-1_170_b2_sep16_scaffold_19_34
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(26941..27171)
DNA (231bp) protein (77aa)
Putative snRNP Sm-like protein Tax=Thaumarchaeota archaeon N4 RepID=V6AR38_9ARCH
Putative snRNP Sm-like protein {ECO:0000313|EMBL:CDI05102.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
small nuclear ribonucleoprotein
PLM3-1_170_b2_sep16_scaffold_19_35
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(27242..27949)
DNA (708bp) protein (236aa)
creatininase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Creatininase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_36
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(27946..28803)
DNA (858bp) protein (286aa)
Putative formyltetrahydrofolate deformylase Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EVB1_9ARCH
Putative formyltetrahydrofolate deformylase {ECO:0000313|EMBL:EPA06219.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
Formyl transferase domain protein
PLM3-1_170_b2_sep16_scaffold_19_trna_5
unknown

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comp(29152..29236)
DNA (85bp)
transferRNA Leu
PLM3-1_170_b2_sep16_scaffold_19_37

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29288..30637
DNA (1350bp) protein (450aa)
Phosphoglucosamine mutase (Pmm-pgm) {ECO:0000313|EMBL:AIF13938.1}; EC=5.4.2.2 {ECO:0000313|EMBL:AIF13938.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_65_A09.;"
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D4F5_9ARCH
Phosphoglucosamine mutase
PLM3-1_170_b2_sep16_scaffold_19_38

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30698..31084
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL52875.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rpl7ae; 50S ribosomal protein L7Ae bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
rpl7ae; 50S ribosomal protein L7Ae
PLM3-1_170_b2_sep16_scaffold_19_39

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31081..31290
DNA (210bp) protein (70aa)
30S ribosomal protein S28e Tax=Candidatus Nitrososphaera gargensis RepID=K0IIL4_NITGG
Uncharacterized protein {ECO:0000313|EMBL:KKL52876.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rps28e; 30S ribosomal protein S28e
PLM3-1_170_b2_sep16_scaffold_19_40
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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31502..31903
DNA (402bp) protein (134aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ndk; nucleoside pyrophosphate kinase (EC:2.7.4.6)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_41
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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31910..33691
DNA (1782bp) protein (594aa)
Putative translation initiation factor IF-2A Tax=Thaumarchaeota archaeon N4 RepID=V6AR70_9ARCH
Probable translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
infB; putative translation initiation factor IF-2
PLM3-1_170_b2_sep16_scaffold_19_42
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(33688..34068)
DNA (381bp) protein (127aa)
Thioredoxin Tax=Thaumarchaeota archaeon N4 RepID=V6ARS9_9ARCH
Thioredoxin
Thioredoxin {ECO:0000313|EMBL:AJW71705.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
PLM3-1_170_b2_sep16_scaffold_19_43
uncultured marine crenarchaeote HF4000_APKG7F11, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(34111..34527)
DNA (417bp) protein (139aa)
Putative uncharacterized protein Tax=environmental samples RepID=B3T460_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:ABZ09279.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; environmental samples.;" source="uncultured marine crenarchaeote HF4000_APKG7F11.;"
archease protein family
PLM3-1_170_b2_sep16_scaffold_19_44

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34634..35914
DNA (1281bp) protein (427aa)
Histidyl-tRNA synthetase (HARS, hisS) {ECO:0000313|EMBL:AIF14734.1}; EC=6.1.1.21 {ECO:0000313|EMBL:AIF14734.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_67_H03.;"
hisS; histidine--tRNA ligase (EC:6.1.1.21)
Putative tRNA synthetase class II core domain (G, H, P, S and T) Tax=uncultured marine crenarchaeote HF4000_APKG3H9 RepID=B3T7P1_9ARCH
PLM3-1_170_b2_sep16_scaffold_19_45

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comp(35898..36581)
DNA (684bp) protein (228aa)
Translation initiation factor 6 {ECO:0000256|HAMAP-Rule:MF_00032}; Short=aIF-6 {ECO:0000256|HAMAP-Rule:MF_00032};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_203_A01.;"
translation initiation factor; K03264 translation initiation factor 6 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
translation initiation factor
PLM3-1_170_b2_sep16_scaffold_19_46
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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36647..37102
DNA (456bp) protein (152aa)
Putative 4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILJ5_NITGG
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Putative 4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:AFU59517.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_19_47
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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37144..37677
DNA (534bp) protein (178aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CYZ9_9ARCH
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:EGP92967.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
putative 4Fe-4S ferredoxin iron-sulfur binding domain protein
PLM3-1_170_b2_sep16_scaffold_19_48
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(37698..38255)
DNA (558bp) protein (186aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF34_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC16640.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_19_49
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(38242..38547)
DNA (306bp) protein (102aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM39_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF85199.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_19_50
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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38573..39418
DNA (846bp) protein (282aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
conserved exported protein of unknown function
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_trna_1
unknown

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39496..39579
DNA (84bp)
transferRNA Ser
PLM3-1_170_b2_sep16_scaffold_19_51
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(39583..40521)
DNA (939bp) protein (313aa)
Replication factor C small subunit Tax=Thaumarchaeota archaeon N4 RepID=V6ARU2_9ARCH
Replication factor C small subunit {ECO:0000313|EMBL:CDI05128.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
rfcS; Replication factor C small subunit
PLM3-1_170_b2_sep16_scaffold_19_52
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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40656..41171
DNA (516bp) protein (172aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
GINS complex protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_53
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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41168..43252
DNA (2085bp) protein (695aa)
MCM family protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
MCM family protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_54
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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43249..45375
DNA (2127bp) protein (709aa)
DEAD/DEAH box helicase; K03726 helicase [EC:3.6.4.-] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
putative ski2-type helicase (EC:3.6.4.-)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_55

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45375..46364
DNA (990bp) protein (330aa)
Glycosyl transferase family protein (ALG7) {ECO:0000313|EMBL:AIF17775.1}; EC=2.7.8.15 {ECO:0000313|EMBL:AIF17775.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_79_B12.;"
glycosyl transferase family protein; K01001 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [EC:2.7.8.15] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
glycosyl transferase
PLM3-1_170_b2_sep16_scaffold_19_56
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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46361..46603
DNA (243bp) protein (81aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2EQX4_9ARCH
conserved exported protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:EPA04849.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia BG20.;"
PLM3-1_170_b2_sep16_scaffold_19_57
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(46600..47085)
DNA (486bp) protein (162aa)
Putative bacterial transferase hexapeptide (Three repeats) Tax=Thaumarchaeota archaeon N4 RepID=V6ARF3_9ARCH
Putative bacterial transferase hexapeptide (Three repeats) {ECO:0000313|EMBL:CDI05134.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Acetyltransferase
Displaying items 31-60 of 96 in total

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