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PLM3-1_170_b2_sep16_scaffold_19

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_19_1
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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1..138
DNA (138bp) protein (46aa)
arsR family transcriptional regulator bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ArsR family transcriptional regulator
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_2
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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149..448
DNA (300bp) protein (100aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AR35_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05049.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_19_3
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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581..799
DNA (219bp) protein (73aa)
pdaD; Pyruvoyl-dependent arginine decarboxylase (EC:4.1.1.19)
Pyruvoyl-dependent arginine decarboxylase {ECO:0000256|HAMAP-Rule:MF_01404}; Short=PvlArgDC {ECO:0000256|HAMAP-Rule:MF_01404};; EC=4.1.1.19 {ECO:0000256|HAMAP-Rule:MF_01404};; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
arginine decarboxylase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_170_b2_sep16_scaffold_19_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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828..1130
DNA (303bp) protein (101aa)
arginine decarboxylase (EC:4.1.1.19)
arginine decarboxylase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_5
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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comp(1319..2071)
DNA (753bp) protein (251aa)
High-affinity nickel-transporter Tax=Thaumarchaeota archaeon N4 RepID=V6AQN0_9ARCH
High-affinity nickel-transporter {ECO:0000313|EMBL:CDI05046.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
high-affinity nickel-transporter
PLM3-1_170_b2_sep16_scaffold_19_6
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2076..2477)
DNA (402bp) protein (134aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J7_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15734.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_19_7
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(2474..3043)
DNA (570bp) protein (190aa)
Putative arginase family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J6_9ARCH
putative arginase family protein
Putative arginase family protein {ECO:0000313|EMBL:AIC15733.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_19_8
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(3069..3494)
DNA (426bp) protein (142aa)
Putative arginase family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J6_9ARCH
putative arginase family protein
Putative arginase family protein {ECO:0000313|EMBL:AIC15733.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_19_9
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3997..5538
DNA (1542bp) protein (514aa)
Putative Sodium:solute symporter family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J3_9ARCH
Na+/proline symporter
Na+/proline symporter {ECO:0000313|EMBL:AIF84942.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_19_10

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comp(5615..6646)
DNA (1032bp) protein (344aa)
Isopropylmalate/homocitrate/citramalate synthase family protein (SKI3, TTC37) {ECO:0000313|EMBL:AIF10748.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_47_A03.;"
hypothetical protein bin=bin2_Thaum species=Methanoregula boonei genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin2_Thaum organism_group=Archaeon
putative endonuclease related to Holliday junction resolvase
PLM3-1_170_b2_sep16_scaffold_19_11

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comp(7053..7307)
DNA (255bp) protein (85aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J5_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AIF10793.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_47_A04.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_19_12
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(7359..9071)
DNA (1713bp) protein (571aa)
ureC2; urease subunit alpha (EC:3.5.1.5)
Urease {ECO:0000256|RuleBase:RU000510}; EC=3.5.1.5 {ECO:0000256|RuleBase:RU000510};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
Urease Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BGB1_9ARCH
PLM3-1_170_b2_sep16_scaffold_19_13
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(9072..9437)
DNA (366bp) protein (122aa)
Urea amidohydrolase beta subunit Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BE67_9ARCH
urea amidohydrolase subunit beta
Urea amidohydrolase beta subunit {ECO:0000313|EMBL:AFS83322.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
PLM3-1_170_b2_sep16_scaffold_19_14
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(9444..9824)
DNA (381bp) protein (127aa)
ureA2; urease subunit gamma (EC:3.5.1.5)
Urease subunit gamma {ECO:0000313|EMBL:AIC15744.1}; EC=3.5.1.5 {ECO:0000313|EMBL:AIC15744.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
urease subunit gamma Tax=cellular organisms RepID=UPI00037A47A6
PLM3-1_170_b2_sep16_scaffold_19_15
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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9851..10360
DNA (510bp) protein (170aa)
Urease accessory protein Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BCY8_9ARCH
Urease accessory protein
Urease accessory protein {ECO:0000313|EMBL:AFS83324.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
PLM3-1_170_b2_sep16_scaffold_19_16
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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10350..11045
DNA (696bp) protein (232aa)
hypothetical protein Tax=cellular organisms RepID=UPI000364E031
ureF; urease accessory protein UreF
Urease accessory protein UreF {ECO:0000313|EMBL:AJM92602.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
PLM3-1_170_b2_sep16_scaffold_19_17
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11063..11725
DNA (663bp) protein (221aa)
Urease accessory protein UreG Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I8G0_NITGG
urease accessory protein UreG
Urease accessory protein UreG {ECO:0000256|HAMAP-Rule:MF_01389}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_19_18
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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11722..12585
DNA (864bp) protein (288aa)
Urease accessory protein UreD Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BE76_9ARCH
urease accessory protein
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
PLM3-1_170_b2_sep16_scaffold_19_19
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12738..14438
DNA (1701bp) protein (567aa)
Putative TCP-1/cpn60 chaperonin family protein Tax=uncultured marine crenarchaeote HF4000_APKG7F11 RepID=B3T9J0_9ARCH
chaperonin GroEL
Chaperonin GroEL {ECO:0000313|EMBL:AIF84949.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_19_20
Candidatus Nitrosopelagicus brevis, Candidatus Nitrosopelagicus, Thaumarchaeota, Archaea

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14555..15007
DNA (453bp) protein (151aa)
hypothetical protein
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Uncharacterized protein {ECO:0000313|EMBL:AJA92725.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Candidatus Nitrosopelagicus brevis.;"
PLM3-1_170_b2_sep16_scaffold_19_21
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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14997..15353
DNA (357bp) protein (119aa)
Ribonuclease H
Ribonuclease H {ECO:0000313|EMBL:AJW71726.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
ribonuclease H bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_170_b2_sep16_scaffold_19_22

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15408..17516
DNA (2109bp) protein (703aa)
acyl-CoA synthetase Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI0003821CD2
CoA-binding domain-containing protein (YfiQ) {ECO:0000313|EMBL:AIE98643.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_06_B11.;"
putative acetyl coenzyme A synthetase (ADP forming), alpha domain protein
PLM3-1_170_b2_sep16_scaffold_19_23
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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17571..18503
DNA (933bp) protein (311aa)
abfD; 4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase (EC:4.2.1.120 5.3.3.3)
Vinylacetyl-CoA Delta-isomerase Tax=Candidatus Nitrosoarchaeum limnia RepID=F3KL79_9ARCH
Vinylacetyl-CoA Delta-isomerase {ECO:0000313|EMBL:EGG41886.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
PLM3-1_170_b2_sep16_scaffold_19_24
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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18469..19107
DNA (639bp) protein (213aa)
4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase {ECO:0000313|EMBL:CDI05065.1}; EC=4.2.1.120 {ECO:0000313|EMBL:CDI05065.1};; EC=5.3.3.3 {ECO:0000313|EMBL:CDI05065.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
4-hydroxybutyryl-CoA dehydratase (EC:1.14.13.3)
4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase Tax=Thaumarchaeota archaeon N4 RepID=V6AR86_9ARCH
PLM3-1_170_b2_sep16_scaffold_19_25
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(19104..19757)
DNA (654bp) protein (218aa)
peptidase S26B, signal peptidase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
peptidase S26B, signal peptidase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_26

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comp(19812..20546)
DNA (735bp) protein (245aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AUW2_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AIF20001.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_88_C09.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_19_27
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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20785..22212
DNA (1428bp) protein (476aa)
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
DEAD/DEAH box helicase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_28
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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22275..22607
DNA (333bp) protein (111aa)
thiol-disulfide isomerase; K03671 thioredoxin 1 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
trxA; thioredoxin
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_19_29
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

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22676..23194
DNA (519bp) protein (173aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AV40_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI06338.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
hypothetical protein
PLM3-1_170_b2_sep16_scaffold_19_30

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comp(23244..23681)
DNA (438bp) protein (146aa)
hypothetical protein Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI0003817783
Uncharacterized protein {ECO:0000313|EMBL:AIF20004.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_88_C09.;"
hypothetical protein
Displaying items 1-30 of 96 in total

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