ggKbase home page

PLM3-1_170_b2_sep16_scaffold_171

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_171_1
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(3..170)
DNA (168bp) protein (56aa)
nirK; putative copper-containing nitrite reductase (EC:1.7.2.1)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_2
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

278..1672
DNA (1395bp) protein (465aa)
Aspartate ammonia-lyase {ECO:0000313|EMBL:CDI05992.1}; EC=4.3.1.1 {ECO:0000313|EMBL:CDI05992.1};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
Aspartate ammonia-lyase Tax=Thaumarchaeota archaeon N4 RepID=V6ATM2_9ARCH
fumarate lyase
PLM3-1_170_b2_sep16_scaffold_171_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

1674..2942
DNA (1269bp) protein (423aa)
MiaB-like tRNA modifying enzyme bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
MiaB-like tRNA modifying enzyme
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

3030..3971
DNA (942bp) protein (314aa)
tubulin/FtsZ GTPase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
tubulin/FtsZ GTPase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_5

Not on your lists

comp(3976..4500)
DNA (525bp) protein (175aa)
hypothetical protein Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00037A98CA
Ribosomal protein L31e (RP-L31e, RPL31) {ECO:0000313|EMBL:AIF25307.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote SAT1000_50_F07.;"
ribosomal protein L31E
PLM3-1_170_b2_sep16_scaffold_171_6
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(4502..4720)
DNA (219bp) protein (73aa)
50S ribosomal protein L39e Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BAG1_9ARCH
50S ribosomal protein L39e
50S ribosomal protein L39e {ECO:0000256|HAMAP-Rule:MF_00629}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
PLM3-1_170_b2_sep16_scaffold_171_7
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(4751..5305)
DNA (555bp) protein (185aa)
NUDIX hydrolase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
NUDIX hydrolase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_8
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

5385..6140
DNA (756bp) protein (252aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6AU75_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05998.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
methylenetetrahydrofolate reductase (NAD(P)H) domain protein
PLM3-1_170_b2_sep16_scaffold_171_9

Not on your lists

6137..7063
DNA (927bp) protein (309aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_ANIW97M7 RepID=B3T3B8_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM64843.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b2_sep16_scaffold_171_10

Not on your lists

7056..8069
DNA (1014bp) protein (338aa)
Methionine synthase (B12-independent) (MetE) {ECO:0000313|EMBL:AIF22712.1}; EC=2.1.1.14 {ECO:0000313|EMBL:AIF22712.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote SAT1000_10_F12.;"
methionine synthase (B12-independent) (EC:2.1.1.14)
Putative Methionine synthase, vitamin-B12 independent Tax=uncultured marine crenarchaeote HF4000_ANIW97M7 RepID=B3T3B7_9ARCH
PLM3-1_170_b2_sep16_scaffold_171_11
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

8125..9180
DNA (1056bp) protein (352aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon N4 RepID=V6ATC5_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:CDI05775.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
conserved exported protein of unknown function
PLM3-1_170_b2_sep16_scaffold_171_12
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

comp(9219..9977)
DNA (759bp) protein (253aa)
Putative binding-protein-dependent transport system inner membrane component Tax=Thaumarchaeota archaeon N4 RepID=V6ATU3_9ARCH
Putative binding-protein-dependent transport system inner membrane component {ECO:0000313|EMBL:CDI06004.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
ABC transporter, permease protein
PLM3-1_170_b2_sep16_scaffold_171_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(9974..10753)
DNA (780bp) protein (260aa)
ABC transporter bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ABC transporter
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_14

Not on your lists

comp(10755..11780)
DNA (1026bp) protein (342aa)
Putative NLPA lipoprotein Tax=uncultured marine crenarchaeote HF4000_ANIW97M7 RepID=B3T3B4_9ARCH
Aliphatic sulfonate ABC transporter periplasmic ligand-binding protein (ABC.SN.S) {ECO:0000313|EMBL:AIF03461.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_167_H09.;"
ABC transporter, substrate-binding protein, aliphatic sulfonates family
PLM3-1_170_b2_sep16_scaffold_171_15
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

11938..13125
DNA (1188bp) protein (396aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
Argininosuccinate synthase Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CZ38_9ARCH
argininosuccinate synthase
PLM3-1_170_b2_sep16_scaffold_171_16
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

13137..13304
DNA (168bp) protein (56aa)
Lysine biosynthesis protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CZ39_9ARCH
lysW; Alpha-aminoadipate/glutamate carrier protein LysW
Lysine biosynthesis protein {ECO:0000313|EMBL:EGP94197.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
PLM3-1_170_b2_sep16_scaffold_171_17
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

13305..14162
DNA (858bp) protein (286aa)
lysine biosynthesis protein LysX bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
lysX; lysine biosynthesis enzyme LysX
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_18
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

14193..15245
DNA (1053bp) protein (351aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38) bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_19
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

15249..16049
DNA (801bp) protein (267aa)
argB; Acetylglutamate/acetylaminoadipate kinase (EC:2.7.2.- 2.7.2.8)
acetylglutamate kinase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_20
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

16046..17221
DNA (1176bp) protein (392aa)
acetylornithine and succinylornithine aminotransferase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
argD; transaminase, acetylornithine/succinylornithine family
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_21

Not on your lists

17214..17633
DNA (420bp) protein (140aa)
AsnC family transcription regulator (LysM) {ECO:0000313|EMBL:AIF18277.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_82_C03.;"
AsnC family transcriptional regulator bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
putative HTH-type transcriptional regulator LysM
PLM3-1_170_b2_sep16_scaffold_171_22
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

17752..18942
DNA (1191bp) protein (397aa)
aksA; putative homocitrate synthase AksA (EC:2.3.3.- 2.3.3.14)
Pyruvate carboxyltransferase Tax=Thaumarchaeota archaeon N4 RepID=V6ATV1_9ARCH
Pyruvate carboxyltransferase {ECO:0000313|EMBL:CDI06014.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
PLM3-1_170_b2_sep16_scaffold_171_23
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

18946..19110
DNA (165bp) protein (55aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
lysW; Alpha-aminoadipate/glutamate carrier protein LysW
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_24
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

19107..19955
DNA (849bp) protein (283aa)
Lysine biosynthesis enzyme LysX Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CZ47_9ARCH
Lysine biosynthesis enzyme LysX {ECO:0000313|EMBL:EGP94205.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
lysine biosynthesis protein LysX
PLM3-1_170_b2_sep16_scaffold_171_25
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

19959..21092
DNA (1134bp) protein (378aa)
N-acetyl-ornithine/N-acetyl-lysine deacetylase Tax=Thaumarchaeota archaeon N4 RepID=V6ATP7_9ARCH
N-acetyl-ornithine/N-acetyl-lysine deacetylase {ECO:0000313|EMBL:CDI06017.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
N-acetyl-ornithine/N-acetyl-lysine deacetylase
PLM3-1_170_b2_sep16_scaffold_171_26
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

21124..22161
DNA (1038bp) protein (346aa)
Diphthine synthase (EC:2.1.1.98)
Diphthine synthase Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KKK9_9ARCH
Diphthine synthase {ECO:0000313|EMBL:EGG42018.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
PLM3-1_170_b2_sep16_scaffold_171_27
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

22208..22825
DNA (618bp) protein (206aa)
cytidyltransferase-like protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Cytidyltransferase-like protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_28
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(23037..23723)
DNA (687bp) protein (229aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_29
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(23731..24873)
DNA (1143bp) protein (381aa)
DNA primase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
DNA primase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b2_sep16_scaffold_171_30

Not on your lists

comp(24960..25334)
DNA (375bp) protein (125aa)
TOPRIM domain-containing protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Toprim domain protein {ECO:0000313|EMBL:KFM14980.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-O18.;"
TOPRIM domain-containing protein
Displaying items 1-30 of 42 in total

View Taxonomy