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PLM3-1_170_b2_sep16_scaffold_2557

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b2_sep16_scaffold_2557_1
unknown

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comp(3..68)
DNA (66bp) protein (22aa)

This feature has no annotations

PLM3-1_170_b2_sep16_scaffold_2557_2
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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316..570
DNA (255bp) protein (85aa)
rpoH; DNA-directed RNA polymerase subunit H (EC:2.7.7.6)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA-directed RNA polymerase subunit H Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IE60_NITGG
PLM3-1_170_b2_sep16_scaffold_2557_3
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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943..3810
DNA (2868bp) protein (956aa)
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU000431};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
DNA-directed RNA polymerase Tax=Candidatus Nitrososphaera gargensis RepID=K0ILI7_NITGG
PLM3-1_170_b2_sep16_scaffold_2557_4
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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3814..7635
DNA (3822bp) protein (1274aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
rpoA; DNA-directed RNA polymerase subunit A (EC:2.7.7.6)
DNA-directed RNA polymerase Tax=Candidatus Nitrososphaera gargensis RepID=K0IC33_NITGG
PLM3-1_170_b2_sep16_scaffold_2557_5
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7610..7927
DNA (318bp) protein (106aa)
50S ribosomal protein L30e Tax=Candidatus Nitrososphaera gargensis RepID=K0I766_NITGG
rpl30e; 50S ribosomal protein L30e
50S ribosomal protein L30e {ECO:0000313|EMBL:AFU57106.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2557_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8017..8493
DNA (477bp) protein (159aa)
Archaeal NusA family KH domain containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH19_NITGG
archaeal NusA family KH domain containing protein
Probable transcription termination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2557_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8497..8934
DNA (438bp) protein (146aa)
30S ribosomal protein S12 Tax=Candidatus Nitrososphaera gargensis RepID=K0IE68_NITGG
rps12p; 30S ribosomal protein S12p
30S ribosomal protein S12 {ECO:0000256|RuleBase:RU004490}; Flags: Fragment;; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera gargensis.;"
PLM3-1_170_b2_sep16_scaffold_2557_8
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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8937..9542
DNA (606bp) protein (202aa)
30S ribosomal protein S7 Tax=Candidatus Nitrososphaera gargensis RepID=K0ILJ0_NITGG
rps7p; 30S ribosomal protein S7p
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2557_9
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9609..10541
DNA (933bp) protein (311aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC41_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15605.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_2557_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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10538..11779
DNA (1242bp) protein (414aa)
Replication factor C large subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I772_NITGG
rfcL; replication factor C large subunit
Replication factor C large subunit {ECO:0000313|EMBL:AFU57111.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2557_11
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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11776..12150
DNA (375bp) protein (125aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH23_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57112.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2557_12
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12168..12386
DNA (219bp) protein (73aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC66_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57135.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2557_13
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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12577..13500
DNA (924bp) protein (308aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIC9_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIC15081.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM3-1_170_b2_sep16_scaffold_2557_14
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13605..14243)
DNA (639bp) protein (213aa)
Uncharacterized protein Tax=Microvirga sp. WSM3557 RepID=I4Z1H3_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF82830.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_2557_15
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14423..14995
DNA (573bp) protein (191aa)
Putative glyoxalase/bleomycin resistance protein/dioxygenase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INV4_NITGG
putative ring-cleavage extradiol dioxygenase
Putative ring-cleavage extradiol dioxygenase {ECO:0000313|EMBL:AIF82673.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
PLM3-1_170_b2_sep16_scaffold_2557_16
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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15341..16756
DNA (1416bp) protein (472aa)
accB; acetyl-CoA/propionyl-CoA carboxylase, carboxyltransferase subunit (EC:6.4.1.3)
Acetyl-CoA/ propionyl-CoA carboxylase, carboxyltransferase subunit {ECO:0000313|EMBL:AFU57136.1}; EC=6.4.1.3 {ECO:0000313|EMBL:AFU57136.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Acetyl-CoA/ propionyl-CoA carboxylase, carboxyltransferase subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I798_NITGG
PLM3-1_170_b2_sep16_scaffold_2557_17
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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16764..18272
DNA (1509bp) protein (503aa)
accC; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylation subunit (EC:6.3.4.14 6.4.1.2)
Acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylation subunit {ECO:0000313|EMBL:AFU57137.1}; EC=6.3.4.14 {ECO:0000313|EMBL:AFU57137.1};; EC=6.4.1.2 {ECO:0000313|EMBL:AFU57137.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylation subunit Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH60_NITGG
PLM3-1_170_b2_sep16_scaffold_2557_18
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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18274..18789
DNA (516bp) protein (172aa)
Putative biotin/lipoyl attachment domain-containing protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEA5_NITGG
biotin/lipoyl attachment domain-containing protein
Putative biotin/lipoyl attachment domain-containing protein {ECO:0000313|EMBL:AFU57138.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2557_19
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(18843..19340)
DNA (498bp) protein (166aa)
Alkyl hydroperoxide reductase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IC71_NITGG
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:AFU57140.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2557_20
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(19377..20564)
DNA (1188bp) protein (396aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase {ECO:0000313|EMBL:AFU57141.1}; EC=2.8.1.7 {ECO:0000313|EMBL:AFU57141.1};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Cysteine desulfurase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0I7A3_NITGG
PLM3-1_170_b2_sep16_scaffold_2557_21
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(20557..21375)
DNA (819bp) protein (273aa)
Putative ATP-utilizing enzyme of the PP-loop superfamily Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH62_NITGG
ATP-utilizing enzyme of the PP-loop superfamily
Putative ATP-utilizing enzyme of the PP-loop superfamily {ECO:0000313|EMBL:AFU57142.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM3-1_170_b2_sep16_scaffold_2557_22
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(21390..22532)
DNA (1143bp) protein (381aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEB0_NITGG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU57143.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
Displaying 22 items

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